Design of a multiplex quantitative reverse transcription-PCR system to simultaneously detect 16 pathogens associated with bovine respiratory and enteric diseases.


Journal

Journal of applied microbiology
ISSN: 1365-2672
Titre abrégé: J Appl Microbiol
Pays: England
ID NLM: 9706280

Informations de publication

Date de publication:
Oct 2020
Historique:
received: 16 03 2020
revised: 23 04 2020
accepted: 27 04 2020
pubmed: 2 5 2020
medline: 31 12 2020
entrez: 2 5 2020
Statut: ppublish

Résumé

Bovine respiratory disease (BRD) and bovine enteric disease (BED) are two major diseases in cattle, resulting in severe economic losses in the dairy and beef industries. The two major diseases are associated with several factors such as viruses, bacteria, the health condition of the host and environmental factors. We aimed to design a new efficient diagnostic method, which rapidly detect causative pathogens, minimizing economic loss due to BRD and BED. We designed a multiplex quantitative reverse transcription-PCR (qRT-PCR) system for the simultaneous diagnosis of 16 pathogens, including 12 viruses and 4 bacteria related to BRD and BED, based on single qRT-PCR assays in previous studies. The designed multiplex qRT-PCR was highly sensitive and has minimal detection levels which will be no different from those of single qRT-PCR. Moreover, the multiplex qRT-PCR could more efficiently detect the causative pathogens than conventional RT-PCR in test using a part of BRD and BED clinical samples. Furthermore, our data revealed that the multiplex qRT-PCR had high performance in its specificity and reproducibility tests. Our system can effectively detect multiple BRD or BED related pathogens from each animal while testing several clinical samples via the multiplex qRT-PCR. It is more time-, cost- and labour-efficient than other diagnostic methods. Rapid detection of infected animals from the herd using our system will greatly contribute to infection control and prompt treatment in field.

Identifiants

pubmed: 32357286
doi: 10.1111/jam.14685
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

832-847

Informations de copyright

© 2020 The Society for Applied Microbiology.

Références

Al-Yousif, Y., Anderson, J., Chard-Bergstrom, C. and Kapil, S. (2002) Development, evaluation, and application of lateral-flow immunoassay (immunochromatography) for detection of rotavirus in bovine fecal samples. Clin Diagn Lab Immunol 9, 723-724.
Aita, T., Kuwabara, M., Murayama, K., Sasagawa, Y., Yabe, S., Higuchi, R., Tamura, T., Miyazaki, A.et al. (2012) Characterization of epidemic diarrhea outbreaks associated with bovine torovirus in adult cows. Arch Virol 157, 423-431.
Blas-Machado, U., Saliki, J.T., Boileau, M.J., Goens, S.D., Caseltine, S.L., Duffy, J.C. and Welsh, R.D. (2007) Fatal ulcerative and hemorrhagic typhlocolitis in a pregnant heifer associated with natural bovine enterovirus type-1 infection. Vet Pathol 44, 110-115.
Boxus, M., Letellier, C. and Kerkhofs, P. (2005) Real time RT-PCR for the detection and quantitation of bovine respiratory syncytial virus. J Virol Methods 125, 125-130.
Chang, K.O., Parwani, A.V., Smith, D. and Saif, L.J. (1997) Detection of group B rotaviruses in fecal samples from diarrheic calves and adult cows and characterization of their VP7 genes. J Clin Microbiol 35, 2107-2110.
Cho, Y.I., Han, J.I., Wang, C., Cooper, V., Schwartz, K., Engelken, T. and Yoon, K.J. (2013) Case-control study of microbiological etiology associated with calf diarrhea. Vet Microbiol 166, 375-385.
Cho, Y.I. and Yoon, K.J. (2014) An overview of calf diarrhea-infectious etiology, diagnosis, and intervention. J Vet Sci 15, 1-17.
Dhama, K., Chauhan, R.S., Mahendran, M. and Malik, S.V.S. (2009) Rotavirus diarrhea in bovines and other domestic animals. Vet Res Commun 33, 1-23.
Ellis, J.A. (2001) The immunology of the bovine respiratory disease complex. Vet Clin North Am Food Anim Pract 17, 535-550.
Ferguson, L., Olivier, A.K., Genova, S., Epperson, W.B., Smith, D.R., Schneider, L., Barton, K., McCuan, K.et al. (2016) Pathogenesis of influenza D virus in cattle. J Virol 90, 5636-5642.
Fukuda, M., Kuga, K., Miyazaki, A., Suzuki, T., Tasei, K., Aita, T., Mase, M., Sugiyama, M.et al. (2012) Development and application of one-step multiplex reverse transcription PCR for simultaneous detection of five diarrheal viruses in adult cattle. Arch Virol 157, 1063-1069.
Fulton, R.W. and Confer, A.W. (2012) Laboratory test descriptions for bovine respiratory disease diagnosis and their strengths and weaknesses: gold standards for diagnosis, do they exist?Can Vet J 53, 754-761.
Gomez, D.E. and Weese, J.S. (2017) Viral enteritis in calves. Can Vet J 58, 1267-1274.
Gorden, P.J. and Plummer, P. (2010) Control, management, and prevention of bovine respiratory disease in dairy calves and cows. Vet Clin Food Anim 26, 243-259.
Griffin, D., Chengappa, M.M., Kuszak, J. and McVey, D.S. (2010) Bacterial pathogens of the bovine respiratory disease complex. Vet Clin Food Anim 26, 381-394.
Hayashi, M., Nagai, M., Hayakawa, Y., Takeuchi, K. and Tsunemitsu, H. (2001) Outbreak of diarrhoea and milk drop in cows infected with bovine group B rotavirus. Vet Rec 149, 331-332.
Hoffmann, B., Depner, K., Schirrmeier, H. and Beer, M. (2006) A universal heterologous internal control system for duplex real-time RT-PCR assays used in a detection system for pestiviruses. J Virol Methods 136, 200-209.
Hodgson, P.D., Aich, P., Manuja, A., Hokamp, K., Roche, F.M., Brinkman, F.S.L., Potter, A., Babiuk, L.A.et al. (2005) Effect of stress on viral-bacterial synergy in bovine respiratory disease: novel mechanisms to regulate inflammation. Comp Funct Genom 6, 244-250.
Horwood, P.F. and Mahony, T.J. (2011) Multiplex real-time RT-PCR detection of three viruses associated with the bovine respiratory disease complex. J Virol Methods 171, 360-363.
Ito, T., Okada, N., Okawa, M., Fukuyama, S. and Shimizu, M. (2009) Detection and characterization of bovine torovirus from the respiratory tract in Japanese cattle. Vet Microbiol 136, 366-371.
Jiménez-Clavero, M.A., Escribano-Romero, E., Mansilla, C., Gómez, N., Córdoba, L., Roblas, N., Ponz, F., Ley, V.et al. (2005) Survey of bovine enterovirus in biological and environmental samples by a highly sensitive real-time reverse transcription-PCR. Appl Environ Microbiol 71, 3536-3543.
Kahrs, R.F. (2001) Adenoviruses. In Viral Disease of Cattle (2nd edn) ed. Kahrs, R.F. pp. 81-87. Ames: Iowa State University Press.
Kirisawa, R., Takeyama, A., Koiwa, M. and Iwai, H. (2007) Detection of bovine torovirus in fecal specimens of calves with diarrhea in Japan. J Vet Med Sci 69, 471-476.
Kishimoto, M., Tsuchiaka, S., Rahpaya, S.S., Hasebe, A., Otsu, K., Sugimura, S., Kobayashi, S., Komatsu, N.et al. (2017) Development of a one-run real-time PCR detection system for pathogens associated with bovine respiratory disease complex. J Vet Med Sci 79, 517-523.
Loy, J.D., Leger, L., Workman, A.M., Clawson, M.L., Bulut, E. and Wang, B. (2018) Development of a multiplex real-time PCR assay using two thermocycling platforms for detection of major bacterial pathogens associated with bovine respiratory disease complex from clinical samples. J Vet Diagn Invest 30, 837-847.
Lyon, M., Leroux, C., Greenland, T., Chastang, J., Patet, J. and Mornex, J.F. (1997) Presence of a unique parainfluenza virus 3 strain identified by RT-PCR in visna-maedi virus infected sheep. Vet Microbiol 57, 95-104.
Mackay, I.M., Arden, K.E. and Nitsche, A. (2002) Real-time PCR in virology. Nucleic Acids Res 30, 1292-1305.
Mawatari, T., Taneichi, A., Kawagoe, T., Hosokawa, M., Togashi, K. and Tsunemitsu, H. (2004) Detection of a bovine group C rotavirus from adult cows with diarrhea and reduced milk production. J Vet Med Sci 66, 887-890.
Mawatari, T., Hirano, K., Ikeda, H., Tsunemitsu, H. and Suzuki, T. (2014) Surveillance of diarrhea-causing pathogens in dairy and beef cows in Yamagata Prefecture, Japan from 2002 to 2011. Microbiol Immunol 58, 530-535.
Murakami, S., Endoh, M., Kobayashi, T., Takenaka-Uema, A., Chambers, J.K., Uchida, K., Nishihara, M., Hause, B.et al. (2016) Influenza D virus infection in herd of cattle, Japan. Emerg Infect Dis 22, 1517-1519.
Ng, T.F., Kondov, N.O., Deng, X., Van Eenennaam, A., Neibergs, H.L. and Delwart, E. (2015) A metagenomics and case-control study to identify viruses associated with bovine respiratory disease. J Virol 89, 5340-5349.
Pardon, B., De Bleecker, K., Dewulf, J., Callens, J., Boyen, F., Catry, B. and Deprez, P. (2011) Prevalence of respiratory pathogens in diseased, non-vaccinated, routinely medicated veal calves. Vet Rec 169, 278.
Reed, L.J. and Muench, H. (1938) A simple method of estimating fifty per cent endpoints. Am J Hyg 28, 493-497.
Sachse, K., Salam, H.S.H., Diller, R., Schubert, E., Hoffmann, B. and Hotzel, H. (2010) Use of a novel real-time PCR technique to monitor and quantitate Mycoplasma bovis infection in cattle herds with mastitis and respiratory disease. Vet J 186, 299-303.
Snowder, G.D., Van Vleck, L.D., Cundiff, L.V. and Bennett, G.L. (2006) Bovine respiratory disease in feedlot cattle: environmental, genetic, and economic factors. J Anim Sci 84, 1999-2008.
Srikumaran, S., Kelling, C.L. and Ambagala, A. (2008) Immune evasion by pathogens of bovine respiratory disease complex. Anim Health Res Rev 8, 215-229.
Thanthrige-Don, N., Lung, O., Furukawa-Stoffer, T., Buchanan, C., Joseph, T., Godson, D.L., Gilleard, J., Alexander, T.et al. (2018) A novel multiplex PCR-electronic microarray assay for rapid and simultaneous detection of bovine respiratory and enteric pathogens. J Virol Methods 261, 51-62.
Toftaker, I., Holmøy, I., Nødtvedt, A., Østerås, O. and Stokstad, M. (2017) A cohort study of the effect of winter dysentery on herd-level milk production. J Dairy Sci 100, 6483-6493.
Tsuchiaka, S., Masuda, T., Sugimura, S., Kobayashi, S., Komatsu, N., Nagai, M., Omatsu, T., Furuya, T.et al. (2016) Development of a novel detection system for microbes from bovine diarrhea by real-time PCR. J Vet Med Sci 78, 383-389.
Valarcher, J.F., Schelcher, F. and Bourhy, H. (2000) Evolution of bovine respiratory syncytial virus. J Virol 74, 10714-10728.
Vilcek, S., Herring, A.J., Herring, J.A., Nettleton, P.F., Lowings, J.P. and Paton, D.J. (1994) Pestiviruses isolated from pigs, cattle and sheep can be allocated into at least three genogroups using polymerase chain reaction and restriction endonuclease analysis. Arch Virol 136, 309-323.
Wernike, K., Hoffmann, B., Kalthoff, D., König, P. and Beer, M. (2011) Development and validation of a triplex real-time PCR assay for the rapid detection and differentiation of wild-type and glycoprotein E-deleted vaccine strains of bovine herpesvirus type 1. J Virol Methods 174, 77-84.
Wong, K. and Xagoraraki, I. (2010) Quantitative PCR assays to survey the bovine adenovirus levels in environmental samples. J Appl Microbiol 109, 605-612.
Zhu, L., Xing, Z., Gai, X., Li, S., San, Z. and Wang, X. (2014) Identification of a novel enterovirus E isolates HY12 from cattle with severe respiratory and enteric diseases. PLoS ONE 9, e97730.

Auteurs

Y Goto (Y)

Central Iwate Prefectural Livestock Health and Hygiene Centre, Takizawa, Iwate, Japan.

G Yaegashi (G)

Central Iwate Prefectural Livestock Health and Hygiene Centre, Takizawa, Iwate, Japan.

K Fukunari (K)

Central Iwate Prefectural Livestock Health and Hygiene Centre, Takizawa, Iwate, Japan.

T Suzuki (T)

Division of Viral Disease and Epidemiology, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan.

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