Understanding the binding affinity of noscapines with protease of SARS-CoV-2 for COVID-19 using MD simulations at different temperatures.


Journal

Journal of biomolecular structure & dynamics
ISSN: 1538-0254
Titre abrégé: J Biomol Struct Dyn
Pays: England
ID NLM: 8404176

Informations de publication

Date de publication:
04 2021
Historique:
pubmed: 5 5 2020
medline: 22 6 2021
entrez: 5 5 2020
Statut: ppublish

Résumé

The current outbreak of a novel coronavirus, named as SARS-CoV-2 causing COVID-19 occurred in 2019, is in dire need of finding potential therapeutic agents. Recently, ongoing viral epidemic due to coronavirus (SARS-CoV-2) primarily affected mainland China that now threatened to spread to populations in most countries of the world. In spite of this, there is currently no antiviral drug/ vaccine available against coronavirus infection, COVID-19. In the present study, computer-aided drug design-based screening to find out promising inhibitors against the coronavirus (SARS-CoV-2) leads to infection, COVID-19. The lead therapeutic molecule was investigated through docking and molecular dynamics simulations. In this, binding affinity of noscapines(23B)-protease of SARS-CoV-2 complex was evaluated through MD simulations at different temperatures. Our research group has established that noscapine is a chemotherapeutic agent for the treatment of drug resistant cancers; however, noscapine was also being used as anti-malarial, anti-stroke and cough-suppressant. This study suggests for the first time that noscapine exerts its antiviral effects by inhibiting viral protein synthesis.

Identifiants

pubmed: 32362235
doi: 10.1080/07391102.2020.1752310
pmc: PMC7212547
doi:

Substances chimiques

Antiviral Agents 0
Protease Inhibitors 0
Viral Nonstructural Proteins 0
Noscapine 8V32U4AOQU
Peptide Hydrolases EC 3.4.-
Cysteine Endopeptidases EC 3.4.22.-

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

2659-2672

Auteurs

Durgesh Kumar (D)

Department of Chemistry, A.R.S.D. College, University of Delhi, New Delhi, India.
Drug Discovery & Development Laboratory, Department of Chemistry, University of Delhi, Delhi, India.

Kamlesh Kumari (K)

Department of Zoology, D.D.U. College, University of Delhi, New Delhi, India.

Abhilash Jayaraj (A)

SCFBio, Indian Institute of Technology, New Delhi, India.

Vinod Kumar (V)

Special Centre for Nano Sciences, Jawaharlal Nehru University, Delhi, India.

Ramappa Venkatesh Kumar (RV)

Department of Zoology, Babasaheb Bhimrao Ambedkar University, Lucknow, UP, India.

Sujata K Dass (SK)

Department of Neurology, BLK Super Speciality Hospital, New Delhi, India.

Ramesh Chandra (R)

Drug Discovery & Development Laboratory, Department of Chemistry, University of Delhi, Delhi, India.

Prashant Singh (P)

Department of Chemistry, A.R.S.D. College, University of Delhi, New Delhi, India.

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Classifications MeSH