In vitro capture and characterization of embryonic rosette-stage pluripotency between naive and primed states.


Journal

Nature cell biology
ISSN: 1476-4679
Titre abrégé: Nat Cell Biol
Pays: England
ID NLM: 100890575

Informations de publication

Date de publication:
05 2020
Historique:
received: 25 10 2018
accepted: 20 03 2020
pubmed: 6 5 2020
medline: 8 7 2020
entrez: 6 5 2020
Statut: ppublish

Résumé

Following implantation, the naive pluripotent epiblast of the mouse blastocyst generates a rosette, undergoes lumenogenesis and forms the primed pluripotent egg cylinder, which is able to generate the embryonic tissues. How pluripotency progression and morphogenesis are linked and whether intermediate pluripotent states exist remain controversial. We identify here a rosette pluripotent state defined by the co-expression of naive factors with the transcription factor OTX2. Downregulation of blastocyst WNT signals drives the transition into rosette pluripotency by inducing OTX2. The rosette then activates MEK signals that induce lumenogenesis and drive progression to primed pluripotency. Consequently, combined WNT and MEK inhibition supports rosette-like stem cells, a self-renewing naive-primed intermediate. Rosette-like stem cells erase constitutive heterochromatin marks and display a primed chromatin landscape, with bivalently marked primed pluripotency genes. Nonetheless, WNT induces reversion to naive pluripotency. The rosette is therefore a reversible pluripotent intermediate whereby control over both pluripotency progression and morphogenesis pivots from WNT to MEK signals.

Identifiants

pubmed: 32367046
doi: 10.1038/s41556-020-0508-x
pii: 10.1038/s41556-020-0508-x
doi:

Substances chimiques

Chromatin 0
Otx Transcription Factors 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

534-545

Commentaires et corrections

Type : CommentIn

Références

Weinberger, L., Ayyash, M., Novershtern, N. & Hanna, J. H. Dynamic stem cell states: naive to primed pluripotency in rodents and humans. Nat. Rev. Mol. Cell Biol. 17, 155–169 (2016).
pubmed: 26860365 pmcid: 26860365 doi: 10.1038/nrm.2015.28
Bedzhov, I. & Zernicka-Goetz, M. Self-organizing properties of mouse pluripotent cells initiate morphogenesis upon implantation. Cell 156, 1032–1044 (2014).
pubmed: 24529478 pmcid: 3991392 doi: 10.1016/j.cell.2014.01.023
Shahbazi, M. N. et al. Pluripotent state transitions coordinate morphogenesis in mouse and human embryos. Nature 552, 239–243 (2017).
pubmed: 29186120 pmcid: 5768241 doi: 10.1038/nature24675
Morgani, S., Nichols, J. & Hadjantonakis, A. K. The many faces of pluripotency: in vitro adaptations of a continuum of in vivo states. BMC Dev. Biol. 17, 7 (2017).
pubmed: 28610558 pmcid: 5470286 doi: 10.1186/s12861-017-0150-4
Smith, A. Formative pluripotency: the executive phase in a developmental continuum. Development 144, 365–373 (2017).
pubmed: 28143843 pmcid: 5430734 doi: 10.1242/dev.142679
ten Berge, D. et al. Embryonic stem cells require Wnt proteins to prevent differentiation to epiblast stem cells. Nat. Cell Biol. 13, 1070–1075 (2011).
pubmed: 21841791 pmcid: 4157727 doi: 10.1038/ncb2314
Ying, Q. L. et al. The ground state of embryonic stem cell self-renewal. Nature 453, 519–523 (2008).
pubmed: 5328678 pmcid: 5328678 doi: 10.1038/nature06968
Tuysuz, N. et al. Lipid-mediated Wnt protein stabilization enables serum-free culture of human organ stem cells. Nat. Commun. 8, 14578 (2017).
pubmed: 28262686 pmcid: 5343445 doi: 10.1038/ncomms14578
Yi, F. et al. Opposing effects of Tcf3 and Tcf1 control Wnt stimulation of embryonic stem cell self-renewal. Nat. Cell Biol. 13, 762–770 (2011).
pubmed: 21685894 pmcid: 3129424 doi: 10.1038/ncb2283
Wray, J. et al. Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation. Nat. Cell Biol. 13, 838–U246 (2011).
pubmed: 21685889 pmcid: 3160487 doi: 10.1038/ncb2267
Kemp, C., Willems, E., Abdo, S., Lambiv, L. & Leyns, L. Expression of all Wnt genes and their secreted antagonists during mouse blastocyst and postimplantation development. Dev. Dyn. 233, 1064–1075 (2005).
pubmed: 15880404 doi: 10.1002/dvdy.20408 pmcid: 15880404
ten Berge, D. et al. Wnt signaling mediates self-organization and axis formation in embryoid bodies. Cell Stem Cell 3, 508–518 (2008).
pubmed: 18983966 pmcid: 2683270 doi: 10.1016/j.stem.2008.09.013
Wang, Q. T. et al. A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo. Dev. Cell 6, 133–144 (2004).
pubmed: 14723853 doi: 10.1016/S1534-5807(03)00404-0
Albeck, J. G., Mills, G. B. & Brugge, J. S. Frequency-modulated pulses of ERK activity transmit quantitative proliferation signals. Mol. Cell 49, 249–261 (2013).
pubmed: 23219535 doi: 10.1016/j.molcel.2012.11.002
Hayashi, K., Ohta, H., Kurimoto, K., Aramaki, S. & Saitou, M. Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells. Cell 146, 519–532 (2011).
pubmed: 21820164 doi: 10.1016/j.cell.2011.06.052
Boroviak, T. et al. Lineage-specific profiling delineates the emergence and progression of naive pluripotency in mammalian embryogenesis. Dev. Cell 35, 366–382 (2015).
pubmed: 26555056 pmcid: 4643313 doi: 10.1016/j.devcel.2015.10.011
Gardner, R. L., Lyon, M. F., Evans, E. P. & Burtenshaw, M. D. Clonal analysis of X-chromosome inactivation and the origin of the germ line in the mouse embryo. J. Embryol. Exp. Morphol. 88, 349–363 (1985).
pubmed: 4078538
Kurek, D. et al. Endogenous WNT signals mediate BMP-induced and spontaneous differentiation of epiblast stem cells and human embryonic stem cells. Stem Cell Reports 4, 114–128 (2015).
pubmed: 25544567 doi: 10.1016/j.stemcr.2014.11.007
Masaki, H. et al. Interspecific in vitro assay for the chimera-forming ability of human pluripotent stem cells. Development 142, 3222–3230 (2015).
pubmed: 26023098 doi: 10.1242/dev.124016
Veluscek, G., Li, Y., Yang, S. H. & Sharrocks, A. D. Jun-mediated changes in cell adhesion contribute to mouse embryonic stem cell exit from ground state pluripotency. Stem Cells 34, 1213–1224 (2016).
pubmed: 26850660 pmcid: 4864893 doi: 10.1002/stem.2294
Kalkan, T. et al. Tracking the embryonic stem cell transition from ground state pluripotency. Development 144, 1221–1234 (2017).
pubmed: 28174249 pmcid: 5399622 doi: 10.1242/dev.142711
Gardner, R. L. & Cockroft, D. L. Complete dissipation of coherent clonal growth occurs before gastrulation in mouse epiblast. Development 125, 2397–2402 (1998).
pubmed: 9609822
Buecker, C. et al. Reorganization of enhancer patterns in transition from naive to primed pluripotency. Cell Stem Cell 14, 838–853 (2014).
pubmed: 24905168 pmcid: 4491504 doi: 10.1016/j.stem.2014.04.003
Yang, S. H. et al. Otx2 and Oct4 drive early enhancer activation during embryonic stem cell transition from naive pluripotency. Cell Rep. 7, 1968–1981 (2014).
pubmed: 24931607 pmcid: 4074343 doi: 10.1016/j.celrep.2014.05.037
Acampora, D., Di Giovannantonio, L. G. & Simeone, A. Otx2 is an intrinsic determinant of the embryonic stem cell state and is required for transition to a stable epiblast stem cell condition. Development 140, 43–55 (2013).
pubmed: 23154415 doi: 10.1242/dev.085290
Habibi, E. et al. Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells. Cell Stem Cell 13, 360–369 (2013).
pubmed: 23850244 doi: 10.1016/j.stem.2013.06.002
Marks, H. et al. The transcriptional and epigenomic foundations of ground state pluripotency. Cell 149, 590–604 (2012).
pubmed: 22541430 doi: 10.1016/j.cell.2012.03.026
Leitch, H. G. et al. Naive pluripotency is associated with global DNA hypomethylation. Nat. Struct. Mol. Biol. 20, 311–316 (2013).
pubmed: 23416945 pmcid: 3591483 doi: 10.1038/nsmb.2510
Ficz, G. et al. FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency. Cell Stem Cell 13, 351–359 (2013).
pubmed: 23850245 pmcid: 3765959 doi: 10.1016/j.stem.2013.06.004
von Meyenn, F. et al. Impairment of DNA methylation maintenance is the main cause of global demethylation in naive embryonic stem cells. Mol. Cell 62, 848–861 (2016).
doi: 10.1016/j.molcel.2016.04.025
Galonska, C., Ziller, M. J., Karnik, R. & Meissner, A. Ground state conditions induce rapid reorganization of core pluripotency factor binding before global epigenetic reprogramming. Cell Stem Cell 17, 462–470 (2015).
pubmed: 26235340 pmcid: 4592414 doi: 10.1016/j.stem.2015.07.005
Bernstein, B. E. et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315–326 (2006).
pubmed: 16630819 doi: 10.1016/j.cell.2006.02.041 pmcid: 16630819
Azuara, V. et al. Chromatin signatures of pluripotent cell lines. Nat. Cell Biol. 8, 532–538 (2006).
pubmed: 16570078 doi: 10.1038/ncb1403 pmcid: 16570078
Mikkelsen, T. S. et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448, 553–560 (2007).
pubmed: 17603471 pmcid: 2921165 doi: 10.1038/nature06008
Kurimoto, K. et al. Quantitative dynamics of chromatin remodeling during germ cell specification from mouse embryonic stem cells. Cell Stem Cell 16, 517–532 (2015).
pubmed: 25800778 doi: 10.1016/j.stem.2015.03.002 pmcid: 25800778
Tosolini, M. et al. Contrasting epigenetic states of heterochromatin in the different types of mouse pluripotent stem cells. Sci. Rep. 8, 5776 (2018).
pubmed: 29636490 pmcid: 5893598 doi: 10.1038/s41598-018-23822-4
Martin, G. R. Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. Proc. Natl Acad. Sci. USA 78, 7634–7638 (1981).
pubmed: 6950406 doi: 10.1073/pnas.78.12.7634 pmcid: 6950406
Evans, M. J. & Kaufman, M. H. Establishment in culture of pluripotential cells from mouse embryos. Nature 292, 154–156 (1981).
pubmed: 7242681 doi: 10.1038/292154a0 pmcid: 7242681
Brons, I. G. et al. Derivation of pluripotent epiblast stem cells from mammalian embryos. Nature 448, 191–195 (2007).
pubmed: 17597762 pmcid: 17597762 doi: 10.1038/nature05950
Tesar, P. J. et al. New cell lines from mouse epiblast share defining features with human embryonic stem cells. Nature 448, 196–199 (2007).
pubmed: 17597760 pmcid: 17597760 doi: 10.1038/nature05972
Lyashenko, N. et al. Differential requirement for the dual functions of β-catenin in embryonic stem cell self-renewal and germ layer formation. Nat. Cell Biol. 13, 753–U365 (2011).
pubmed: 21685890 pmcid: 3130149 doi: 10.1038/ncb2260
Biechele, S., Cockburn, K., Lanner, F., Cox, B. J. & Rossant, J. Porcn-dependent Wnt signaling is not required prior to mouse gastrulation. Development 140, 2961–2971 (2013).
pubmed: 23760955 doi: 10.1242/dev.094458
Augustin, I. et al. Autocrine Wnt regulates the survival and genomic stability of embryonic stem cells. Sci. Signal. 10, eaah6829 (2017).
pubmed: 28074006 doi: 10.1126/scisignal.aah6829
Bao, S. et al. Epigenetic reversion of post-implantation epiblast to pluripotent embryonic stem cells. Nature 461, 1292–1295 (2009).
doi: 10.1038/nature08534 pubmed: 19816418
Guo, G. et al. Klf4 reverts developmentally programmed restriction of ground state pluripotency. Development 136, 1063–1069 (2009).
pubmed: 2685927 pmcid: 2685927 doi: 10.1242/dev.030957
Watanabe, A., Yamada, Y. & Yamanaka, S. Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier. Philos. Trans. R. Soc. Lond. B Biol. Sci. 368, 20120292 (2013).
pubmed: 23166402 pmcid: 3539367 doi: 10.1098/rstb.2012.0292
Messerschmidt, D. M., Knowles, B. B. & Solter, D. DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos. Genes Dev. 28, 812–828 (2014).
pubmed: 24736841 pmcid: 4003274 doi: 10.1101/gad.234294.113
Becker, J. S., Nicetto, D. & Zaret, K. S. H3K9me3-dependent heterochromatin: barrier to cell fate changes. Trends Genet. 32, 29–41 (2016).
pubmed: 26675384 doi: 10.1016/j.tig.2015.11.001
Bogdanovic, O. & Lister, R. DNA methylation and the preservation of cell identity. Curr. Opin. Genet. Dev. 46, 9–14 (2017).
pubmed: 28651214 doi: 10.1016/j.gde.2017.06.007
Saksouk, N. et al. Redundant mechanisms to form silent chromatin at pericentromeric regions rely on BEND3 and DNA methylation. Mol. Cell 56, 580–594 (2014).
pubmed: 25457167 doi: 10.1016/j.molcel.2014.10.001
Chazaud, C., Yamanaka, Y., Pawson, T. & Rossant, J. Early lineage segregation between epiblast and primitive endoderm in mouse blastocysts through the Grb2–MAPK pathway. Dev. Cell 10, 615–624 (2006).
pubmed: 16678776 doi: 10.1016/j.devcel.2006.02.020
Chazaud, C. & Yamanaka, Y. Lineage specification in the mouse preimplantation embryo. Development 143, 1063–1074 (2016).
pubmed: 27048685 doi: 10.1242/dev.128314
Boroviak, T., Loos, R., Bertone, P., Smith, A. & Nichols, J. The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification. Nat. Cell Biol. 16, 516–528 (2014).
pubmed: 24859004 doi: 10.1038/ncb2965
Hoshino, H., Shioi, G. & Aizawa, S. AVE protein expression and visceral endoderm cell behavior during anterior–posterior axis formation in mouse embryos: asymmetry in OTX2 and DKK1 expression. Dev. Biol. 402, 175–191 (2015).
pubmed: 25910836 doi: 10.1016/j.ydbio.2015.03.023 pmcid: 25910836
Ang, S. L. et al. A targeted mouse Otx2 mutation leads to severe defects in gastrulation and formation of axial mesoderm and to deletion of rostral brain. Development 122, 243–252 (1996).
pubmed: 8565836 pmcid: 8565836
Chazaud, C. & Rossant, J. Disruption of early proximodistal patterning and AVE formation in Apc mutants. Development 133, 3379–3387 (2006).
pubmed: 16887818 doi: 10.1242/dev.02523 pmcid: 16887818
Moser, A. R. et al. Homozygosity for the Min allele of Apc results in disruption of mouse development prior to gastrulation. Dev. Dyn. 203, 422–433 (1995).
pubmed: 7496034 doi: 10.1002/aja.1002030405
Eden, E., Navon, R., Steinfeld, I., Lipson, D. & Yakhini, Z. GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics 10, 48 (2009).
pubmed: 19192299 pmcid: 19192299 doi: 10.1186/1471-2105-10-48
Supek, F., Bosnjak, M., Skunca, N. & Smuc, T. REVIGO summarizes and visualizes long lists of Gene Ontology terms. PLoS ONE 6, e21800 (2011).
pubmed: 21789182 pmcid: 3138752 doi: 10.1371/journal.pone.0021800
Okabe, M., Ikawa, M., Kominami, K., Nakanishi, T. & Nishimune, Y. ‘Green mice’ as a source of ubiquitous green cells. FEBS Lett. 407, 313–319 (1997).
pubmed: 9175875 doi: 10.1016/S0014-5793(97)00313-X
Ostermeier, G. C., Wiles, M. V., Farley, J. S. & Taft, R. A. Conserving, distributing and managing genetically modified mouse lines by sperm cryopreservation. PLoS ONE 3, e2792 (2008).
pubmed: 18665210 pmcid: 2453316 doi: 10.1371/journal.pone.0002792
Bedzhov, I., Leung, C. Y., Bialecka, M. & Zernicka-Goetz, M. In vitro culture of mouse blastocysts beyond the implantation stages. Nat. Protoc. 9, 2732–2739 (2014).
pubmed: 25356584 doi: 10.1038/nprot.2014.186
Iacovino, M., Roth, M. E. & Kyba, M. Rapid genetic modification of mouse embryonic stem cells by Inducible Cassette Exchange recombination. Methods Mol. Biol. 1101, 339–351 (2014).
pubmed: 24233789 pmcid: 3935508 doi: 10.1007/978-1-62703-721-1_16
Kyba, M., Perlingeiro, R. C. & Daley, G. Q. HoxB4 confers definitive lymphoid-myeloid engraftment potential on embryonic stem cell and yolk sac hematopoietic progenitors. Cell 109, 29–37 (2002).
pubmed: 11955444 doi: 10.1016/S0092-8674(02)00680-3
Willert, K. et al. Wnt proteins are lipid-modified and can act as stem cell growth factors. Nature 423, 448–452 (2003).
pubmed: 12717451 doi: 10.1038/nature01611
Muraro, M. J. et al. A single-cell transcriptome atlas of the human pancreas. Cell Syst. 3, 385–394.e3 (2016).
pubmed: 27693023 pmcid: 5092539 doi: 10.1016/j.cels.2016.09.002
Hashimshony, T. et al. CEL-Seq2: sensitive highly-multiplexed single-cell RNA-seq. Genome Biol. 17, 77 (2016).
pubmed: 27121950 pmcid: 4848782 doi: 10.1186/s13059-016-0938-8
Grun, D., Kester, L. & van Oudenaarden, A. Validation of noise models for single-cell transcriptomics. Nat. Methods 11, 637–640 (2014).
pubmed: 24747814 doi: 10.1038/nmeth.2930
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
pubmed: 4302049 pmcid: 4302049 doi: 10.1186/s13059-014-0550-8
Kroeze, L. I. et al. Characterization of acute myeloid leukemia based on levels of global hydroxymethylation. Blood 124, 1110–1118 (2014).
pubmed: 24986689 doi: 10.1182/blood-2013-08-518514 pmcid: 24986689
van de Werken, C. et al. A universal method for sequential immunofluorescent analysis of chromatin and chromatin-associated proteins on chromosome spreads. Chromosome Res. 21, 475–489 (2013).
pubmed: 23896649 doi: 10.1007/s10577-013-9373-9 pmcid: 23896649
Grewal, S. I. & Jia, S. Heterochromatin revisited. Nat. Rev. Genet. 8, 35–46 (2007).
pubmed: 17173056 doi: 10.1038/nrg2008 pmcid: 17173056

Auteurs

Alex Neagu (A)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Emiel van Genderen (E)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Irene Escudero (I)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Lucas Verwegen (L)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Dorota Kurek (D)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Johannes Lehmann (J)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Jente Stel (J)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

René A M Dirks (RAM)

Department of Molecular Biology, Faculty of Science, Radboud University, Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, The Netherlands.

Guido van Mierlo (G)

Department of Molecular Biology, Faculty of Science, Radboud University, Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, The Netherlands.

Alex Maas (A)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Cindy Eleveld (C)

Division of Reproductive Medicine, Department of Obstetrics and Gynaecology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Yang Ge (Y)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Alexander T den Dekker (AT)

Center for Biomics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Rutger W W Brouwer (RWW)

Center for Biomics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Wilfred F J van IJcken (WFJ)

Center for Biomics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Miha Modic (M)

The Francis Crick Institute, London, UK.
Department for Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK.

Micha Drukker (M)

Institute of Stem Cell Research, Helmholtz Zentrum München, Neuherberg, Germany.

Joop H Jansen (JH)

Department of Laboratory Medicine, Laboratory of Hematology, Radboud University, Nijmegen Medical Centre and Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, The Netherlands.

Nicolas C Rivron (NC)

Institute of Molecular Biotechnology of the Austrian Academy of Sciences, Vienna Biocenter (VBC), Vienna, Austria.

Esther B Baart (EB)

Division of Reproductive Medicine, Department of Obstetrics and Gynaecology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.
Department of Developmental Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Hendrik Marks (H)

Department of Molecular Biology, Faculty of Science, Radboud University, Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, The Netherlands.

Derk Ten Berge (D)

Department of Cell Biology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands. d.tenberge@erasmusmc.nl.

Articles similaires

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male
Humans Meals Time Factors Female Adult

Classifications MeSH