Ultra-Barcoding Discovers a Cryptic Species in

DNA barcodes Melanthiaceae Paris liiana new species plastomes ribosomal DNA species identification

Journal

Frontiers in plant science
ISSN: 1664-462X
Titre abrégé: Front Plant Sci
Pays: Switzerland
ID NLM: 101568200

Informations de publication

Date de publication:
2020
Historique:
received: 22 01 2020
accepted: 23 03 2020
entrez: 12 5 2020
pubmed: 12 5 2020
medline: 12 5 2020
Statut: epublish

Résumé

Ultra-barcoding is a technique using whole plastomes and nuclear ribosomal DNA (nrDNA) sequences for plant species identification.

Identifiants

pubmed: 32391031
doi: 10.3389/fpls.2020.00411
pmc: PMC7189017
doi:

Types de publication

Journal Article

Langues

eng

Pagination

411

Informations de copyright

Copyright © 2020 Ji, Liu, Yang, Jin, Yang and Yang.

Références

Syst Biol. 2004 Oct;53(5):793-808
pubmed: 15545256
BMC Plant Biol. 2019 Jul 4;19(1):293
pubmed: 31272375
Acta Pharm Sin B. 2018 Oct;8(6):969-980
pubmed: 30505665
Proc Natl Acad Sci U S A. 2006 Jan 24;103(4):968-71
pubmed: 16418261
Philos Trans R Soc Lond B Biol Sci. 2005 Oct 29;360(1462):1847-57
pubmed: 16214743
BMC Plant Biol. 2019 Dec 5;19(1):543
pubmed: 31805856
Bioinformatics. 2004 Nov 22;20(17):3252-5
pubmed: 15180927
J Comput Biol. 2012 May;19(5):455-77
pubmed: 22506599
Biol Rev Camb Philos Soc. 2015 Feb;90(1):157-66
pubmed: 24666563
Bioinformatics. 2006 Nov 1;22(21):2688-90
pubmed: 16928733
Mol Ecol Resour. 2015 Sep;15(5):1067-78
pubmed: 25611173
Mol Ecol Resour. 2012 Jan;12(1):36-47
pubmed: 21824334
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W686-9
pubmed: 15980563
Plant Biotechnol J. 2011 Apr;9(3):328-33
pubmed: 20796245
Ann Bot. 2016 Jun;117(7):1175-85
pubmed: 27098088
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
PLoS One. 2012;7(2):e30619
pubmed: 22312429
Genome Biol. 2004;5(2):R12
pubmed: 14759262
Mol Ecol. 2016 Apr;25(7):1423-8
pubmed: 26821259
Mol Ecol. 2008 Dec;17(24):5175-6
pubmed: 19067801
Am J Bot. 2012 Feb;99(2):320-9
pubmed: 22301895
Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):19451-2
pubmed: 22109553
Proc Biol Sci. 2003 Feb 7;270(1512):313-21
pubmed: 12614582
Syst Biol. 2006 Aug;55(4):595-609
pubmed: 16967577
Bioinformatics. 2012 Jun 15;28(12):1647-9
pubmed: 22543367
Fitoterapia. 2019 Jun;135:52-63
pubmed: 30999023
Ann Bot. 2006 Jul;98(1):245-56
pubmed: 16704998
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12794-7
pubmed: 19666622
Bioinformatics. 1998;14(9):817-8
pubmed: 9918953
Bioinformatics. 2003 Aug 12;19(12):1572-4
pubmed: 12912839
Front Plant Sci. 2016 Nov 29;7:1797
pubmed: 27965698
Am J Bot. 2012 Feb;99(2):349-64
pubmed: 22174336
Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):19641-6
pubmed: 22100737
Philos Trans R Soc Lond B Biol Sci. 2016 Sep 5;371(1702):
pubmed: 27481790
Mol Ecol Resour. 2019 Sep;19(5):1333-1345
pubmed: 31237984

Auteurs

Yunheng Ji (Y)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.
Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.

Changkun Liu (C)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.

Jin Yang (J)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.
School of Life Sciences, Yunnan University, Kunming, China.

Lei Jin (L)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.
School of Traditional Chinese Medicine, Guangdong Pharmaceutical University, Guangzhou, China.

Zhenyan Yang (Z)

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.

Jun-Bo Yang (JB)

Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.

Classifications MeSH