Preoperative risk stratification in endometrial cancer (ENDORISK) by a Bayesian network model: A development and validation study.


Journal

PLoS medicine
ISSN: 1549-1676
Titre abrégé: PLoS Med
Pays: United States
ID NLM: 101231360

Informations de publication

Date de publication:
05 2020
Historique:
received: 03 12 2019
accepted: 13 04 2020
entrez: 16 5 2020
pubmed: 16 5 2020
medline: 25 7 2020
Statut: epublish

Résumé

Bayesian networks (BNs) are machine-learning-based computational models that visualize causal relationships and provide insight into the processes underlying disease progression, closely resembling clinical decision-making. Preoperative identification of patients at risk for lymph node metastasis (LNM) is challenging in endometrial cancer, and although several biomarkers are related to LNM, none of them are incorporated in clinical practice. The aim of this study was to develop and externally validate a preoperative BN to predict LNM and outcome in endometrial cancer patients. Within the European Network for Individualized Treatment of Endometrial Cancer (ENITEC), we performed a retrospective multicenter cohort study including 763 patients, median age 65 years (interquartile range [IQR] 58-71), surgically treated for endometrial cancer between February 1995 and August 2013 at one of the 10 participating European hospitals. A BN was developed using score-based machine learning in addition to expert knowledge. Our main outcome measures were LNM and 5-year disease-specific survival (DSS). Preoperative clinical, histopathological, and molecular biomarkers were included in the network. External validation was performed using 2 prospective study cohorts: the Molecular Markers in Treatment in Endometrial Cancer (MoMaTEC) study cohort, including 446 Norwegian patients, median age 64 years (IQR 59-74), treated between May 2001 and 2010; and the PIpelle Prospective ENDOmetrial carcinoma (PIPENDO) study cohort, including 384 Dutch patients, median age 66 years (IQR 60-73), treated between September 2011 and December 2013. A BN called ENDORISK (preoperative risk stratification in endometrial cancer) was developed including the following predictors: preoperative tumor grade; immunohistochemical expression of estrogen receptor (ER), progesterone receptor (PR), p53, and L1 cell adhesion molecule (L1CAM); cancer antigen 125 serum level; thrombocyte count; imaging results on lymphadenopathy; and cervical cytology. In the MoMaTEC cohort, the area under the curve (AUC) was 0.82 (95% confidence interval [CI] 0.76-0.88) for LNM and 0.82 (95% CI 0.77-0.87) for 5-year DSS. In the PIPENDO cohort, the AUC for 5-year DSS was 0.84 (95% CI 0.78-0.90). The network was well-calibrated. In the MoMaTEC cohort, 249 patients (55.8%) were classified with <5% risk of LNM, with a false-negative rate of 1.6%. A limitation of the study is the use of imputation to correct for missing predictor variables in the development cohort and the retrospective study design. In this study, we illustrated how BNs can be used for individualizing clinical decision-making in oncology by incorporating easily accessible and multimodal biomarkers. The network shows the complex interactions underlying the carcinogenetic process of endometrial cancer by its graphical representation. A prospective feasibility study will be needed prior to implementation in the clinic.

Sections du résumé

BACKGROUND
Bayesian networks (BNs) are machine-learning-based computational models that visualize causal relationships and provide insight into the processes underlying disease progression, closely resembling clinical decision-making. Preoperative identification of patients at risk for lymph node metastasis (LNM) is challenging in endometrial cancer, and although several biomarkers are related to LNM, none of them are incorporated in clinical practice. The aim of this study was to develop and externally validate a preoperative BN to predict LNM and outcome in endometrial cancer patients.
METHODS AND FINDINGS
Within the European Network for Individualized Treatment of Endometrial Cancer (ENITEC), we performed a retrospective multicenter cohort study including 763 patients, median age 65 years (interquartile range [IQR] 58-71), surgically treated for endometrial cancer between February 1995 and August 2013 at one of the 10 participating European hospitals. A BN was developed using score-based machine learning in addition to expert knowledge. Our main outcome measures were LNM and 5-year disease-specific survival (DSS). Preoperative clinical, histopathological, and molecular biomarkers were included in the network. External validation was performed using 2 prospective study cohorts: the Molecular Markers in Treatment in Endometrial Cancer (MoMaTEC) study cohort, including 446 Norwegian patients, median age 64 years (IQR 59-74), treated between May 2001 and 2010; and the PIpelle Prospective ENDOmetrial carcinoma (PIPENDO) study cohort, including 384 Dutch patients, median age 66 years (IQR 60-73), treated between September 2011 and December 2013. A BN called ENDORISK (preoperative risk stratification in endometrial cancer) was developed including the following predictors: preoperative tumor grade; immunohistochemical expression of estrogen receptor (ER), progesterone receptor (PR), p53, and L1 cell adhesion molecule (L1CAM); cancer antigen 125 serum level; thrombocyte count; imaging results on lymphadenopathy; and cervical cytology. In the MoMaTEC cohort, the area under the curve (AUC) was 0.82 (95% confidence interval [CI] 0.76-0.88) for LNM and 0.82 (95% CI 0.77-0.87) for 5-year DSS. In the PIPENDO cohort, the AUC for 5-year DSS was 0.84 (95% CI 0.78-0.90). The network was well-calibrated. In the MoMaTEC cohort, 249 patients (55.8%) were classified with <5% risk of LNM, with a false-negative rate of 1.6%. A limitation of the study is the use of imputation to correct for missing predictor variables in the development cohort and the retrospective study design.
CONCLUSIONS
In this study, we illustrated how BNs can be used for individualizing clinical decision-making in oncology by incorporating easily accessible and multimodal biomarkers. The network shows the complex interactions underlying the carcinogenetic process of endometrial cancer by its graphical representation. A prospective feasibility study will be needed prior to implementation in the clinic.

Identifiants

pubmed: 32413043
doi: 10.1371/journal.pmed.1003111
pii: PMEDICINE-D-19-04409
pmc: PMC7228042
doi:

Substances chimiques

Biomarkers, Tumor 0
Receptors, Estrogen 0
Receptors, Progesterone 0

Types de publication

Journal Article Multicenter Study Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1003111

Déclaration de conflit d'intérêts

The authors declare no potential conflicts of interest.

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Auteurs

Casper Reijnen (C)

Department of Obstetrics and Gynaecology, Radboud University Medical Center, Nijmegen, The Netherlands.
Department of Obstetrics and Gynaecology, Canisius-Wilhelmina Hospital, Nijmegen, The Netherlands.

Evangelia Gogou (E)

Department of Computing Sciences, Radboud University, Nijmegen, The Netherlands.

Nicole C M Visser (NCM)

Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.

Hilde Engerud (H)

Department of Obstetrics and Gynecology, Haukeland University Hospital, Bergen, Norway.
Centre for Cancer Biomarkers, Department of Clinical Science, University of Bergen, Bergen, Norway.

Jordache Ramjith (J)

Department for Health Evidence, Radboud University Medical Center, Nijmegen, the Netherlands.

Louis J M van der Putten (LJM)

Department of Obstetrics and Gynaecology, Radboud University Medical Center, Nijmegen, The Netherlands.

Koen van de Vijver (K)

Department of Pathology, Ghent University Hospital, Cancer Research Institute Ghent, Ghent, Belgium.

Maria Santacana (M)

Department of Pathology and Molecular Genetics and Research Laboratory, Hospital Universitari Arnau de Vilanova, University of Lleida, IRBLleida, CIBERONC, Lleida, Spain.

Peter Bronsert (P)

Institute of Pathology, University Medical Center, Freiburg, Germany.

Johan Bulten (J)

Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.

Marc Hirschfeld (M)

Department of Obstetrics and Gynecology, University Medical Center, Freiburg, Germany.
Institute of Veterinary Medicine, Georg-August-University, Goettingen, Germany.

Eva Colas (E)

Biomedical Research Group in Gynecology, Vall Hebron Institute of Research, Universitat Autònoma de Barcelona, CIBERONC, Barcelona, Spain.

Antonio Gil-Moreno (A)

Biomedical Research Group in Gynecology, Vall Hebron Institute of Research, Universitat Autònoma de Barcelona, CIBERONC, Barcelona, Spain.
Gynecological Department, Vall Hebron University Hospital, CIBERONC, Barcelona, Spain.

Armando Reques (A)

Pathology Department, Vall Hebron University Hospital, CIBERONC, Barcelona, Spain.

Gemma Mancebo (G)

Department of Obstetrics and Gynecology, Hospital del Mar, PSMAR, Barcelona, Spain.

Camilla Krakstad (C)

Department of Obstetrics and Gynecology, Haukeland University Hospital, Bergen, Norway.
Centre for Cancer Biomarkers, Department of Clinical Science, University of Bergen, Bergen, Norway.

Jone Trovik (J)

Department of Obstetrics and Gynecology, Haukeland University Hospital, Bergen, Norway.
Centre for Cancer Biomarkers, Department of Clinical Science, University of Bergen, Bergen, Norway.

Ingfrid S Haldorsen (IS)

Centre for Cancer Biomarkers, Department of Clinical Science, University of Bergen, Bergen, Norway.
Mohn Medical Imaging and Visualization Centre, Department of Radiology, Haukeland University Hospital, Bergen, Norway.

Jutta Huvila (J)

Department of Pathology, University of Turku, Turku, Finland.

Martin Koskas (M)

Obstetrics and Gynecology Department, Bichat-Claude Bernard Hospital, Paris, France.

Vit Weinberger (V)

Department of Gynecology and Obstetrics, University Hospital in Brno and Masaryk University, Brno, Czech Republic.

Marketa Bednarikova (M)

Department of Internal Medicine, Hematology and Oncology, University Hospital Brno and Masaryk University, Brno, Czech Republic.

Jitka Hausnerova (J)

Department of Pathology, University Hospital Brno and Masaryk University, Brno, Czech Republic.

Anneke A M van der Wurff (AAM)

Department of Pathology, Elisabeth-TweeSteden Hospital, Tilburg, The Netherlands.

Xavier Matias-Guiu (X)

Department of Pathology and Molecular Genetics and Research Laboratory, Hospital Universitari Arnau de Vilanova, University of Lleida, IRBLleida, CIBERONC, Lleida, Spain.

Frederic Amant (F)

Department of Oncology, KU Leuven, Leuven, Belgium.
Center for Gynecologic Oncology Amsterdam, Netherlands Cancer Institute and Amsterdam University Medical Center, The Netherlands.

Leon F A G Massuger (LFAG)

Department of Obstetrics and Gynaecology, Radboud University Medical Center, Nijmegen, The Netherlands.

Marc P L M Snijders (MPLM)

Department of Obstetrics and Gynaecology, Canisius-Wilhelmina Hospital, Nijmegen, The Netherlands.

Heidi V N Küsters-Vandevelde (HVN)

Department of Pathology, Canisius-Wilhelmina Hospital, Nijmegen, The Netherlands.

Peter J F Lucas (PJF)

Department of Data Science, University of Twente, Enschede, The Netherlands.

Johanna M A Pijnenborg (JMA)

Department of Obstetrics and Gynaecology, Radboud University Medical Center, Nijmegen, The Netherlands.

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