Qualitative and quantitative nature of mutual interactions dictate chemical noise in a democratic reaction network.


Journal

Physical review. E
ISSN: 2470-0053
Titre abrégé: Phys Rev E
Pays: United States
ID NLM: 101676019

Informations de publication

Date de publication:
Apr 2020
Historique:
received: 30 11 2019
accepted: 16 03 2020
entrez: 20 5 2020
pubmed: 20 5 2020
medline: 20 5 2020
Statut: ppublish

Résumé

The functions of a living cell rely on a complex network of biochemical reactions that allow it to respond against various internal and external cues. The outcomes of these chemical reactions are often stochastic due to intrinsic and extrinsic noise leading to population heterogeneity. The majority of calculations of stochasticity in reaction networks have focused on small regulatory networks addressing the role of timescales, feedback regulations, and network topology in propagation of noise. Here we computationally investigated chemical noise in a network with democratic architecture where each node is regulated by all other nodes in the network. We studied the effects of the qualitative and quantitative nature of mutual interactions on the propagation of both intrinsic and extrinsic noise in the network. We show that an increased number of inhibitory signals lead to ultrasensitive switching of average and that leads to sharp transition of intrinsic noise. The intrinsic noise exhibits a biphasic power-law scaling with the average, and the scaling coefficients strongly correlate with the strength of inhibitory signal. The noise strength critically depends on the strength of the interactions, where negative interactions attenuate both intrinsic and extrinsic noise.

Identifiants

pubmed: 32422814
doi: 10.1103/PhysRevE.101.042407
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

042407

Auteurs

Soutrick Das (S)

School of Chemistry, University of Hyderabad, Gachibowli, 500046 Hyderabad, India.

Debashis Barik (D)

School of Chemistry, University of Hyderabad, Gachibowli, 500046 Hyderabad, India.

Classifications MeSH