Identification of Differentially Expressed Gene Transcripts in Porcine Endometrium during Early Stages of Pregnancy.

differentially expressed genes downregulated embryo endometrium fold change microarray porcine pregnancy preimplantation transcripts upregulated

Journal

Life (Basel, Switzerland)
ISSN: 2075-1729
Titre abrégé: Life (Basel)
Pays: Switzerland
ID NLM: 101580444

Informations de publication

Date de publication:
16 May 2020
Historique:
received: 22 04 2020
revised: 13 05 2020
accepted: 13 05 2020
entrez: 21 5 2020
pubmed: 21 5 2020
medline: 21 5 2020
Statut: epublish

Résumé

During the early stages of pregnancy, the uterine endometrium undergoes dramatic morphologic and functional changes accompanied with dynamic variation in gene expression. Pregnancy-stage specific differentially expressed gene (DEG)-transcript-probes were investigated and identified by comparing endometrium transcriptome at 9th day (9D), 12th day (12D) and 16th day (16D) of early pregnancy in Polish large-white (PLW) gilts. Endometrium comparisons between 9D-vs-12D, 9D-vs-16D and 12D-vs-16D of early pregnancy identified 6049, 374 and 6034 highly significant DEG-transcript-probes (

Identifiants

pubmed: 32429378
pii: life10050068
doi: 10.3390/life10050068
pmc: PMC7281126
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Narodowe Centrum Nauki
ID : 2013/09/N/NZ9/03135

Références

Physiol Rev. 2006 Jan;86(1):25-88
pubmed: 16371595
Philos Trans R Soc Lond B Biol Sci. 2015 Mar 5;370(1663):20140066
pubmed: 25602070
Bioinformatics. 2013 Mar 1;29(5):661-3
pubmed: 23325622
Mol Cell Endocrinol. 2013 Dec 5;381(1-2):302-11
pubmed: 24012778
Mol Cell. 2015 Oct 1;60(1):105-17
pubmed: 26431027
Genes (Basel). 2015 Dec 21;6(4):1330-46
pubmed: 26703736
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Hum Reprod Update. 2014 Jul-Aug;20(4):517-29
pubmed: 24591147
Biol Reprod. 2013 Dec 12;89(6):134
pubmed: 24174570
Placenta. 1995 Jan;16(1):67-74
pubmed: 7716129
Genome Biol. 2002 Jun 18;3(7):RESEARCH0034
pubmed: 12184808
Biol Reprod. 2018 Jul 1;99(1):225-241
pubmed: 29462279
Mol Aspects Med. 2013 Oct;34(5):939-80
pubmed: 23290997
BMC Genomics. 2019 Nov 21;20(1):895
pubmed: 31752681
BMC Genomics. 2014 Feb 24;15:156
pubmed: 24564230
PLoS One. 2015 Mar 31;10(3):e0122515
pubmed: 25825906
J Reprod Fertil Suppl. 1985;33:57-63
pubmed: 3910827
BMC Genet. 2018 Oct 22;19(1):95
pubmed: 30348079
Reprod Domest Anim. 2011 Sep;46 Suppl 3:31-41
pubmed: 21854459
BMC Genomics. 2018 Jun 14;19(1):459
pubmed: 29898663
Mol Reprod Dev. 2019 Jul;86(7):883-895
pubmed: 31066133
Biol Reprod. 2015 Feb;92(2):52
pubmed: 25519183
Theriogenology. 2018 Aug;116:17-27
pubmed: 29763784
Theriogenology. 2014 Oct 1;82(6):897-909
pubmed: 25123632
Adv Anat Embryol Cell Biol. 2015;216:137-63
pubmed: 26450498
Biol Reprod. 2013 Apr 04;88(4):84
pubmed: 23426436
Sci Rep. 2016 Jan 29;6:20238
pubmed: 26822553
Biol Reprod. 2010 Aug 1;83(2):277-85
pubmed: 20393170
J Cancer Res Clin Oncol. 2018 Oct;144(10):2067-2076
pubmed: 30083818
J Mol Med (Berl). 2020 Apr;98(4):555-567
pubmed: 32072231
Domest Anim Endocrinol. 2014 Apr;47:1-10
pubmed: 24472379
Reproduction. 2009 Aug;138(2):195-209
pubmed: 19502456
Channels (Austin). 2007 Mar-Apr;1(2):62-9
pubmed: 18690016
Biol Reprod. 1982 Nov;27(4):941-55
pubmed: 6184080
Metallomics. 2015 Jan;7(1):71-82
pubmed: 25362850
Philos Trans A Math Phys Eng Sci. 2016 Apr 13;374(2065):20150202
pubmed: 26953178
Int J Mol Sci. 2019 Mar 16;20(6):
pubmed: 30884816
Mol Reprod Dev. 2017 Sep;84(9):842-855
pubmed: 28628266
Anim Genet. 2019 Aug;50(4):326-333
pubmed: 31058330
BMC Genomics. 2013 Jan 22;14:45
pubmed: 23339594
J Reprod Fertil Suppl. 1982 Nov;31:17-30
pubmed: 6762430
BMC Bioinformatics. 2012 Jun 18;13:134
pubmed: 22708584
Int J Mol Sci. 2015 Sep 18;16(9):22692-710
pubmed: 26393584
Genomics. 2005 Oct;86(4):495-503
pubmed: 16054333
Endocrinology. 2001 May;142(5):2123-8
pubmed: 11316780
J Clin Endocrinol Metab. 2012 Oct;97(10):3672-83
pubmed: 22869607
Future Oncol. 2020 Jan;16(3):4461-4473
pubmed: 31854204
Biol Reprod. 2009 Dec;81(6):1122-30
pubmed: 19641180
Reproduction. 2017 May;153(5):695-706
pubmed: 28250242
Am J Reprod Immunol. 2007 Apr;57(4):250-61
pubmed: 17362386
Anim Reprod Sci. 2011 Apr;124(3-4):251-8
pubmed: 21397415
PLoS One. 2015 Nov 18;10(11):e0143436
pubmed: 26580069
J Natl Cancer Inst. 2003 Sep 17;95(18):1362-9
pubmed: 13130111
J Anim Sci. 1991 Feb;69(2):551-8
pubmed: 2016185
J Reprod Fertil Suppl. 1990;40:293-305
pubmed: 2192045
Reprod Fertil Dev. 2001;13(2-3):167-76
pubmed: 11720134
Asian-Australas J Anim Sci. 2012 Aug;25(8):1102-16
pubmed: 25049669
J Clin Epidemiol. 2014 Aug;67(8):850-7
pubmed: 24831050
Nucleic Acids Res. 2009 Apr;37(6):e45
pubmed: 19237396
Mol Reprod Dev. 2009 Jan;76(1):75-84
pubmed: 18459152
Reprod Biol. 2013 Sep;13(3):229-37
pubmed: 24011194
Anal Biochem. 1987 Apr;162(1):156-9
pubmed: 2440339

Auteurs

Mariusz Pierzchała (M)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Dorota Pierzchała (D)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Magdalena Ogłuszka (M)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Ewa Poławska (E)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Tadeusz Blicharski (T)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Agnieszka Roszczyk (A)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Agata Nawrocka (A)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Pawel Urbański (P)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Kamila Stepanow (K)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Aleksandra Ciepłoch (A)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Agnieszka Korwin-Kossakowska (A)

Department of Animal Genomics and Biodiversity, Institute of Genetics and Animal Breeding, Polish Academy of Sciences, Jastrzebiec, 05-552 Magdalenka, Poland.

Marinus F W Te Pas (MFWT)

Wageningen UR Livestock Research, Animal Breeding and Genomics, 6708 PB Wageningen, The Netherlands.

Brygida Slaska (B)

Institute of Biological Bases of Animal Production, Faculty of Biology, Animal Sciences and Bioeconomy, University of Life Sciences in Lublin, 20-950 Lublin, Poland.

Magdalena Buszewska-Forajta (M)

Department of Biopharmaceutics and Pharmacodynamics, Faculty of Pharmacy, Medical University of Gdańsk, 80-416 Gdańsk, Poland.
Institute of Veterinary Medicine, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, 87-100 Toruń, Poland.

Jedrzej M Jaśkowski (JM)

Institute of Veterinary Medicine, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, 87-100 Toruń, Poland.

Mateusz Sachajko (M)

Institute of Veterinary Medicine, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, 87-100 Toruń, Poland.

Magdalena Herudzińska (M)

Institute of Veterinary Medicine, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, 87-100 Toruń, Poland.

Bartosz M Jaśkowski (BM)

Department of Reproduction and Clinic of Farm Animals, Faculty of Veterinary Medicine, Wrocław University of Environmental and Life Science, 50-366 Wrocław, Poland.

Wojciech Niżański (W)

Department of Reproduction and Clinic of Farm Animals, Faculty of Veterinary Medicine, Wrocław University of Environmental and Life Science, 50-366 Wrocław, Poland.

Leyland Fraser (L)

Department of Biochemistry and Animal Biotechnology, Faculty of Animal Bio-engineering, University of Warmia and Mazury in Olsztyn, 10-719 Olsztyn, Poland.

Urszula Czarnik (U)

Department of Pig Breeding, Faculty of Animal Bio-engineering, University of Warmia and Mazury in Olsztyn, 10-719 Olsztyn, Poland.

Haja N Kadarmideen (HN)

Quantitative Genomics, Bioinformatics and Computational Biology Group, Department of Applied Mathematics and Computer Science, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.

Chandra S Pareek (CS)

Institute of Veterinary Medicine, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, 87-100 Toruń, Poland.
Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, 87-100 Toruń, Poland.

Classifications MeSH