Oral microbiome-systemic link studies: perspectives on current limitations and future artificial intelligence-based approaches.


Journal

Critical reviews in microbiology
ISSN: 1549-7828
Titre abrégé: Crit Rev Microbiol
Pays: England
ID NLM: 8914274

Informations de publication

Date de publication:
May 2020
Historique:
pubmed: 22 5 2020
medline: 13 3 2021
entrez: 22 5 2020
Statut: ppublish

Résumé

In the past decade, there has been a tremendous increase in studies on the link between oral microbiome and systemic diseases. However, variations in study design and confounding variables across studies often lead to inconsistent observations. In this narrative review, we have discussed the potential influence of study design and confounding variables on the current sequencing-based oral microbiome-systemic disease link studies. The current limitations of oral microbiome-systemic link studies on type 2 diabetes mellitus, rheumatoid arthritis, pregnancy, atherosclerosis, and pancreatic cancer are discussed in this review, followed by our perspective on how artificial intelligence (AI), particularly machine learning and deep learning approaches, can be employed for predicting systemic disease and host metadata from the oral microbiome. The application of AI for predicting systemic disease as well as host metadata requires the establishment of a global database repository with microbiome sequences and annotated host metadata. However, this task requires collective efforts from researchers working in the field of oral microbiome to establish more comprehensive datasets with appropriate host metadata. Development of AI-based models by incorporating consistent host metadata will allow prediction of systemic diseases with higher accuracies, bringing considerable clinical benefits.

Identifiants

pubmed: 32434436
doi: 10.1080/1040841X.2020.1766414
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

288-299

Auteurs

Chaminda Jayampath Seneviratne (CJ)

Singapore Oral Microbiomics Initiative (SOMI), National Dental Research Institute Singapore, National Dental Centre Singapore, Duke NUS Medical School, Singapore, Singapore.

Preethi Balan (P)

Singapore Oral Microbiomics Initiative (SOMI), National Dental Research Institute Singapore, National Dental Centre Singapore, Duke NUS Medical School, Singapore, Singapore.

Tanujaa Suriyanarayanan (T)

Singapore Oral Microbiomics Initiative (SOMI), National Dental Research Institute Singapore, National Dental Centre Singapore, Duke NUS Medical School, Singapore, Singapore.

Meiyappan Lakshmanan (M)

Bioprocessing Technology Institute (BTI), ASTAR - Agency for Science, Technology and Research, Singapore, Singapore.

Dong-Yup Lee (DY)

Bioprocessing Technology Institute (BTI), ASTAR - Agency for Science, Technology and Research, Singapore, Singapore.
School of Chemical Engineering, Sungkyunkwan University, Jongno-gu, Republic of Korea.

Mina Rho (M)

Departments of Computer Science and Engineering & Biomedical Informatics, Hanyang University, Seoul, Korea.

Nicholas Jakubovics (N)

Oral Biology, School of Dental Sciences, Newcastle University, Newcastle upon Tyne, UK.

Bernd Brandt (B)

Department of Preventive Dentistry, Academic Centre for Dentistry Amsterdam, University of Amsterdam and Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.

Wim Crielaard (W)

Department of Preventive Dentistry, Academic Centre for Dentistry Amsterdam, University of Amsterdam and Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.

Egija Zaura (E)

Department of Preventive Dentistry, Academic Centre for Dentistry Amsterdam, University of Amsterdam and Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.

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Classifications MeSH