Genome-Wide DNA Methylation in Peripheral Blood and Long-Term Exposure to Source-Specific Transportation Noise and Air Pollution: The SAPALDIA Study.


Journal

Environmental health perspectives
ISSN: 1552-9924
Titre abrégé: Environ Health Perspect
Pays: United States
ID NLM: 0330411

Informations de publication

Date de publication:
06 2020
Historique:
entrez: 3 6 2020
pubmed: 3 6 2020
medline: 15 12 2020
Statut: ppublish

Résumé

Few epigenome-wide association studies (EWAS) on air pollutants exist, and none have been done on transportation noise exposures, which also contribute to environmental burden of disease. We performed mutually independent EWAS on transportation noise and air pollution exposures. We used data from two time points of the Swiss Cohort Study on Air Pollution and Lung and Heart Diseases in Adults (SAPALDIA) from 1,389 participants contributing 2,542 observations. We applied multiexposure linear mixed-effects regressions with participant-level random intercept to identify significant Cytosine-phosphate-Guanine (CpG) sites and differentially methylated regions (DMRs) in relation to 1-y average aircraft, railway, and road traffic day-evening-night noise (Lden); nitrogen dioxide ( We found no statistically significant CpGs at false discovery rate Mutually independent DNA methylation was associated with source-specific transportation noise and air pollution exposures, with distinct and shared enrichments for pathways related to inflammation, cellular development, and immune responses. These findings contribute in clarifying the pathways linking these exposures and age-related diseases but need further confirmation in the context of mediation analyses. https://doi.org/10.1289/EHP6174.

Sections du résumé

BACKGROUND
Few epigenome-wide association studies (EWAS) on air pollutants exist, and none have been done on transportation noise exposures, which also contribute to environmental burden of disease.
OBJECTIVE
We performed mutually independent EWAS on transportation noise and air pollution exposures.
METHODS
We used data from two time points of the Swiss Cohort Study on Air Pollution and Lung and Heart Diseases in Adults (SAPALDIA) from 1,389 participants contributing 2,542 observations. We applied multiexposure linear mixed-effects regressions with participant-level random intercept to identify significant Cytosine-phosphate-Guanine (CpG) sites and differentially methylated regions (DMRs) in relation to 1-y average aircraft, railway, and road traffic day-evening-night noise (Lden); nitrogen dioxide (
RESULTS
We found no statistically significant CpGs at false discovery rate
CONCLUSIONS
Mutually independent DNA methylation was associated with source-specific transportation noise and air pollution exposures, with distinct and shared enrichments for pathways related to inflammation, cellular development, and immune responses. These findings contribute in clarifying the pathways linking these exposures and age-related diseases but need further confirmation in the context of mediation analyses. https://doi.org/10.1289/EHP6174.

Identifiants

pubmed: 32484729
doi: 10.1289/EHP6174
pmc: PMC7263738
doi:

Substances chimiques

Air Pollutants 0
Particulate Matter 0
DNA 9007-49-2
Nitrogen Dioxide S7G510RUBH

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

67003

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/S019669/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT 084703MA
Pays : United Kingdom

Références

Soc Sci Med. 2017 Nov;192:66-73
pubmed: 28963986
Eur Respir J. 2015 Jan;45(1):38-50
pubmed: 25193994
Environ Int. 2016 May;91:341-9
pubmed: 27030897
Bioinformatics. 2013 Jan 15;29(2):189-96
pubmed: 23175756
Environ Epigenet. 2016 Apr;2(2):
pubmed: 27453791
Eur J Epidemiol. 2018 May;33(5):441-458
pubmed: 29476357
Epigenomics. 2017 May;9(5):659-668
pubmed: 28470095
Mutat Res. 2015 May;775:66-71
pubmed: 25898780
Antioxid Redox Signal. 2018 Mar 20;28(9):735-740
pubmed: 29278923
BMC Bioinformatics. 2012 May 08;13:86
pubmed: 22568884
Environ Epigenet. 2019 Jan 23;4(4):dvy028
pubmed: 30697444
Environ Sci Technol. 2018 May 1;52(9):5427-5437
pubmed: 29597345
Oncotarget. 2013 Nov;4(11):2154-65
pubmed: 24243817
Environ Int. 2013 Sep;59:418-24
pubmed: 23917442
Ann N Y Acad Sci. 2010 Feb;1186:223-39
pubmed: 20201875
Bioinformatics. 2014 May 15;30(10):1363-9
pubmed: 24478339
Sci Rep. 2017 Sep 5;7(1):10560
pubmed: 28874680
Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20937-42
pubmed: 23213251
Sci Rep. 2016 Sep 15;6:33222
pubmed: 27629060
Environ Health. 2016 Apr 18;15:53
pubmed: 27089921
Stat Appl Genet Mol Biol. 2005;4:Article29
pubmed: 16646847
Am J Prev Med. 2018 Sep;55(3):403-411
pubmed: 30122217
Environ Health Perspect. 2016 Dec;124(12):1905-1912
pubmed: 27219456
Int J Environ Res Public Health. 2018 Feb 07;15(2):
pubmed: 29414890
Inflamm Bowel Dis. 2019 Aug 20;25(9):1541-1549
pubmed: 30801121
Environ Health Perspect. 2015 May;123(5):381-9
pubmed: 25625876
Epigenetics Chromatin. 2015 Jan 27;8:6
pubmed: 25972926
Mutat Res. 2019 May;841:17-22
pubmed: 31138406
Pflugers Arch. 2004 Feb;447(5):722-7
pubmed: 12856180
BMC Public Health. 2019 Jan 3;19(1):3
pubmed: 30606145
Environ Health Perspect. 2016 Jul;124(7):983-90
pubmed: 26731791
Environ Int. 2018 Dec;121(Pt 1):741-750
pubmed: 30321849
PLoS One. 2012;7(7):e41361
pubmed: 22848472
Scand J Work Environ Health. 2017 Nov 1;43(6):509-518
pubmed: 28813586
Am J Hum Genet. 2019 Jan 3;104(1):65-75
pubmed: 30595370
PLoS One. 2012;7(10):e46705
pubmed: 23071618
Environ Int. 2020 Jan;134:105290
pubmed: 31783238
Environ Res. 2018 Oct;166:647-657
pubmed: 30006240
Oncotarget. 2017 Jan 31;8(5):7891-7899
pubmed: 27903959
Environ Res. 2017 Aug;157:153-159
pubmed: 28558263
Hum Mol Genet. 2018 Aug 15;27(16):2840-2850
pubmed: 29790996
Sci Total Environ. 2017 Dec 31;607-608:1103-1108
pubmed: 28724248
PLoS One. 2015 Aug 07;10(8):e0134000
pubmed: 26252872
Environ Health Perspect. 2017 Jan;125(1):104-110
pubmed: 27448387
Eur Heart J. 2019 Feb 14;40(7):598-603
pubmed: 30357335
Soz Praventivmed. 1997;42(2):67-84
pubmed: 9151378
Proc Natl Acad Sci U S A. 2018 Sep 11;115(37):9193-9197
pubmed: 30150383
Epigenetics. 2015;10(6):536-44
pubmed: 25996590
Nat Rev Genet. 2011 Jul 12;12(8):529-41
pubmed: 21747404
Environ Int. 2018 Sep;118:334-347
pubmed: 29935799
Oncotarget. 2016 Nov 15;7(46):74510-74525
pubmed: 27793020
Breast Cancer Res. 2018 Oct 5;20(1):119
pubmed: 30290832
Int J Environ Res Public Health. 2019 Feb 19;16(4):
pubmed: 30791383
Environ Health Perspect. 2014 May;122(5):439-46
pubmed: 24584099
Biofactors. 2019 Jul;45(4):495-506
pubmed: 30937979
Genome Biol. 2016 Dec 12;17(1):255
pubmed: 27955697
Nucleic Acids Res. 2013 Apr;41(7):e90
pubmed: 23476028
Clin Epigenetics. 2019 Feb 28;11(1):37
pubmed: 30819252
Front Neural Circuits. 2018 Feb 27;12:14
pubmed: 29535611
Int J Obes (Lond). 2018 Jun;42(6):1112-1126
pubmed: 29795462
Int J Public Health. 2013 Oct;58(5):649-66
pubmed: 23887610
Environ Health Perspect. 2014 Sep;122(9):919-25
pubmed: 24835336
J Alzheimers Dis. 2019;69(3):597-614
pubmed: 31127781
Genome Biol. 2015 Feb 15;16:37
pubmed: 25853392
Eur Respir J. 2019 Jul 4;54(1):
pubmed: 31073081
Sci Rep. 2019 Jun 19;9(1):8790
pubmed: 31217447
Epidemiology. 2014 May;25(3):368-78
pubmed: 24589872
Trends Cardiovasc Med. 2019 Jul;29(5):283-284
pubmed: 30471986
Chronobiol Int. 2011 Dec;28(10):852-61
pubmed: 22080730
Front Endocrinol (Lausanne). 2018 Nov 13;9:664
pubmed: 30483218
Front Genet. 2019 Apr 05;10:223
pubmed: 31024609
Endocr Rev. 1981 Spring;2(2):137-73
pubmed: 6117463
Nat Genet. 2018 Aug;50(8):1112-1121
pubmed: 30038396
Environ Health Perspect. 2017 Sep 07;125(9):097004
pubmed: 28934719
Stat Appl Genet Mol Biol. 2015 Jun;14(3):279-93
pubmed: 26030794
Cell Mol Neurobiol. 2005 Jun;25(3-4):697-741
pubmed: 16075387
Lancet Oncol. 2013 Aug;14(9):813-22
pubmed: 23849838
Environ Int. 2018 Nov;120:11-21
pubmed: 30055357
Environ Int. 2017 Nov;108:176-184
pubmed: 28863390
Ann Rheum Dis. 2018 May;77(5):736-743
pubmed: 29437559
Soz Praventivmed. 2005;50(4):245-63
pubmed: 16167509
Nat Rev Mol Cell Biol. 2004 Oct;5(10):781-91
pubmed: 15459659
J Epidemiol Community Health. 2012 Dec;66(12):1129-36
pubmed: 22717282
Environ Int. 2018 Feb;111:301-308
pubmed: 29217223
Oncol Lett. 2017 Dec;14(6):6888-6894
pubmed: 29151918
Psychoneuroendocrinology. 2019 Jun;104:64-73
pubmed: 30818253
Curr Environ Health Rep. 2018 Dec;5(4):544-578
pubmed: 30361985
Environ Health Perspect. 2018 Feb 06;126(2):027004
pubmed: 29410382
Environ Int. 2017 Nov;108:127-136
pubmed: 28843141
Autoimmunity. 2008 May;41(4):245-52
pubmed: 18432405
J Mol Biol. 1999 May 14;288(4):567-77
pubmed: 10329163
Environ Int. 2017 May;102:57-65
pubmed: 28284819
Int J Environ Res Public Health. 2018 Feb 22;15(2):
pubmed: 29470452
Eur Heart J. 2017 Oct 1;38(37):2838-2849
pubmed: 28329261
Int J Hyg Environ Health. 2015 Aug;218(6):514-21
pubmed: 26003939
Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9357-62
pubmed: 27432992
Eur Heart J. 2017 Feb 21;38(8):557-564
pubmed: 27460891
Genome Biol. 2019 Nov 14;20(1):235
pubmed: 31727104
Nucleic Acids Res. 2019 Jan 8;47(D1):D983-D988
pubmed: 30364969
Int J Epidemiol. 2017 Aug 1;46(4):1115-1125
pubmed: 28338949
Clin Cancer Res. 2013 Nov 15;19(22):6272-85
pubmed: 24077349
Epigenetics. 2013 Feb;8(2):203-9
pubmed: 23314698
Environ Int. 2019 Nov;132:104723
pubmed: 31208937
Mol Pharmacol. 2018 Oct;94(4):1220-1231
pubmed: 30115672
Environ Res. 2017 Feb;153:73-82
pubmed: 27914298
Hum Mol Genet. 2019 Jan 1;28(1):166-174
pubmed: 30239722
Perspect Public Health. 2018 Mar;138(2):111-121
pubmed: 28829249
Int J Hyg Environ Health. 2017 Mar;220(2 Pt A):142-151
pubmed: 27576363
J Clin Endocrinol Metab. 2015 Sep;100(9):E1255-61
pubmed: 26168277
Nat Genet. 2013 May;45(5):513-7
pubmed: 23563609
Int J Hyg Environ Health. 2017 Aug;220(6):1006-1013
pubmed: 28579229
Environ Health. 2013 May 28;12(1):43
pubmed: 23714370
Environ Mol Mutagen. 2018 Apr;59(3):234-246
pubmed: 29114965
Environ Res. 2019 Sep;176:108550
pubmed: 31260916

Auteurs

Ikenna C Eze (IC)

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.

Ayoung Jeong (A)

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.

Emmanuel Schaffner (E)

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.

Faisal I Rezwan (FI)

Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.
School of Water, Energy and Environment, Cranfield University, Cranfield, UK.

Akram Ghantous (A)

Epigenetics Group, International Agency for Research on Cancer, Lyon, France.

Maria Foraster (M)

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.
ISGlobal, Barcelona Institute for Global Health, Barcelona, Spain.
University Pompeu Fabra, Barcelona, Spain.
CIBER Epidemiologia y Salud Publica, Madrid, Spain.
Blanquerna School of Health Science, Universitat Ramon Llull, Barcelona, Spain.

Danielle Vienneau (D)

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.

Florian Kronenberg (F)

Institute of Genetic Epidemiology, Department of Genetics and Pharmacology, Medical University of Innsbruck, Innsbruck, Austria.

Zdenko Herceg (Z)

Epigenetics Group, International Agency for Research on Cancer, Lyon, France.

Paolo Vineis (P)

MRC-PHE Centre for Environment and Health, School of Public Health, Imperial College London, UK.
Italian Institute for Genomic Medicine (IIGM), Turin, Italy.

Mark Brink (M)

Federal Office for the Environment, Bern, Switzerland.

Jean-Marc Wunderli (JM)

Empa Laboratory for Acoustics/Noise Control, Swiss Federal Laboratories for Material Science and Technology, Dübendorf, Switzerland.

Christian Schindler (C)

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.

Christian Cajochen (C)

Center for Chronobiology, Psychiatric Hospital of the University of Basel, and Transfaculty Research Platform Molecular and Cognitive Neurosciences (MCN), Basel, Switzerland.

Martin Röösli (M)

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.

John W Holloway (JW)

Human Development and Health, Faculty of Medicine, University of Southampton, Southampton, UK.

Medea Imboden (M)

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.

Nicole Probst-Hensch (N)

Swiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel, Basel, Switzerland.

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