Shared ancestral polymorphisms and chromosomal rearrangements as potential drivers of local adaptation in a marine fish.
Mallotus villosus
RAD
fish
inversion
joint Site Frequency Spectrum
population genomics
speciation
δaδi
Journal
Molecular ecology
ISSN: 1365-294X
Titre abrégé: Mol Ecol
Pays: England
ID NLM: 9214478
Informations de publication
Date de publication:
07 2020
07 2020
Historique:
received:
25
09
2019
revised:
19
05
2020
accepted:
26
05
2020
pubmed:
5
6
2020
medline:
8
6
2021
entrez:
5
6
2020
Statut:
ppublish
Résumé
Gene flow has tremendous importance for local adaptation, by influencing the fate of de novo mutations, maintaining standing genetic variation and driving adaptive introgression. Furthermore, structural variation as chromosomal rearrangements may facilitate adaptation despite high gene flow. However, our understanding of the evolutionary mechanisms impending or favouring local adaptation in the presence of gene flow is still limited to a restricted number of study systems. In this study, we examined how demographic history, shared ancestral polymorphism, and gene flow among glacial lineages contribute to local adaptation to sea conditions in a marine fish, the capelin (Mallotus villosus). We first assembled a 490-Mbp draft genome of M. villosus to map our RAD sequence reads. Then, we used a large data set of genome-wide single nucleotide polymorphisms (25,904 filtered SNPs) genotyped in 1,310 individuals collected from 31 spawning sites in the northwest Atlantic. We reconstructed the history of divergence among three glacial lineages and showed that they probably diverged from 3.8 to 1.8 million years ago and experienced secondary contacts. Within each lineage, our analyses provided evidence for large N
Banques de données
Dryad
['10.5061/dryad.hx3ffbgbp']
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
2379-2398Informations de copyright
© 2020 John Wiley & Sons Ltd.
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