Proteomic analysis reveals the direct recruitment of intrinsically disordered regions to stress granules in


Journal

Journal of cell science
ISSN: 1477-9137
Titre abrégé: J Cell Sci
Pays: England
ID NLM: 0052457

Informations de publication

Date de publication:
09 07 2020
Historique:
received: 30 01 2020
accepted: 15 05 2020
pubmed: 7 6 2020
medline: 22 6 2021
entrez: 7 6 2020
Statut: epublish

Résumé

Stress granules (SGs) are stress-induced membraneless condensates that store non-translating mRNA and stalled translation initiation complexes. Although metazoan SGs are dynamic compartments where proteins can rapidly exchange with their surroundings, yeast SGs seem largely static. To gain a better understanding of yeast SGs, we identified proteins that sediment after heat shock using mass spectrometry. Proteins that sediment upon heat shock are biased toward a subset of abundant proteins that are significantly enriched in intrinsically disordered regions (IDRs). Heat-induced SG localization of over 80 proteins were confirmed using microscopy, including 32 proteins not previously known to localize to SGs. We found that several IDRs were sufficient to mediate SG recruitment. Moreover, the dynamic exchange of IDRs can be observed using fluorescence recovery after photobleaching, whereas other components remain immobile. Lastly, we showed that the IDR of the Ubp3 deubiquitinase was critical for yeast SG formation. This work shows that IDRs can be sufficient for SG incorporation, can remain dynamic in vitrified SGs, and can play an important role in cellular compartmentalization upon stress.This article has an associated First Person interview with the first author of the paper.

Identifiants

pubmed: 32503941
pii: jcs.244657
doi: 10.1242/jcs.244657
pii:
doi:

Substances chimiques

RNA, Messenger 0
Saccharomyces cerevisiae Proteins 0
Endopeptidases EC 3.4.-
UBP3 protein, S cerevisiae EC 3.4.99.-

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© 2020. Published by The Company of Biologists Ltd.

Déclaration de conflit d'intérêts

Competing interestsThe authors declare no competing or financial interests.

Auteurs

Mang Zhu (M)

Michael Smith Laboratories, Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4.

Erich R Kuechler (ER)

Michael Smith Laboratories, Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4.

Joyce Zhang (J)

Michael Smith Laboratories, Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4.

Or Matalon (O)

Department of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.

Benjamin Dubreuil (B)

Department of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.

Analise Hofmann (A)

Department of Cellular and Physiological Sciences, University of British Columbia, Vancouver, BC, Canada, V6T 1Z3.

Chris Loewen (C)

Department of Cellular and Physiological Sciences, University of British Columbia, Vancouver, BC, Canada, V6T 1Z3.

Emmanuel D Levy (ED)

Department of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.

Joerg Gsponer (J)

Michael Smith Laboratories, Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4.

Thibault Mayor (T)

Michael Smith Laboratories, Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4 mayor@msl.ubc.ca.

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Classifications MeSH