Robust estimation of the effect of an exposure on the change in a continuous outcome.
Box-Cox transformation
Conditional probit model
Normal errors
Random effects model
Journal
BMC medical research methodology
ISSN: 1471-2288
Titre abrégé: BMC Med Res Methodol
Pays: England
ID NLM: 100968545
Informations de publication
Date de publication:
06 06 2020
06 06 2020
Historique:
received:
20
02
2020
accepted:
21
05
2020
entrez:
8
6
2020
pubmed:
9
6
2020
medline:
25
6
2021
Statut:
epublish
Résumé
The change in two measurements of a continuous outcome can be modelled directly with a linear regression model, or indirectly with a random effects model (REM) of the individual measurements. These methods are susceptible to model misspecifications, which are commonly addressed by applying monotonic transformations (e.g., Box-Cox transformation) to the outcomes. However, transforming the outcomes complicates the data analysis, especially when variable selection is involved. We propose a robust alternative through a novel application of the conditional probit (cprobit) model. The cprobit model analyzes the ordered outcomes within each subject, making the estimate invariant to monotonic transformation on the outcome. By scaling the estimate from the cprobit model, we obtain the exposure effect on the change in the observed or Box-Cox transformed outcome, pending the adequacy of the normality assumption on the raw or transformed scale. Using simulated data, we demonstrated a similar good performance of the cprobit model and REM with and without transformation, except for some bias from both methods when the Box-Cox transformation was applied to scenarios with small sample size and strong effects. Only the cprobit model was robust to skewed subject-specific intercept terms when a Box-Cox transformation was used. Using two real datasets from the breast cancer and inpatient glycemic variability studies which utilize electronic medical records, we illustrated the application of our proposed robust approach as a seamless three-step workflow that facilitates the use of Box-Cox transformation to address non-normality with a common underlying model. The cprobit model provides a seamless and robust inference on the change in continuous outcomes, and its three-step workflow is implemented in an R package for easy accessibility.
Sections du résumé
BACKGROUND
The change in two measurements of a continuous outcome can be modelled directly with a linear regression model, or indirectly with a random effects model (REM) of the individual measurements. These methods are susceptible to model misspecifications, which are commonly addressed by applying monotonic transformations (e.g., Box-Cox transformation) to the outcomes. However, transforming the outcomes complicates the data analysis, especially when variable selection is involved. We propose a robust alternative through a novel application of the conditional probit (cprobit) model.
METHODS
The cprobit model analyzes the ordered outcomes within each subject, making the estimate invariant to monotonic transformation on the outcome. By scaling the estimate from the cprobit model, we obtain the exposure effect on the change in the observed or Box-Cox transformed outcome, pending the adequacy of the normality assumption on the raw or transformed scale.
RESULTS
Using simulated data, we demonstrated a similar good performance of the cprobit model and REM with and without transformation, except for some bias from both methods when the Box-Cox transformation was applied to scenarios with small sample size and strong effects. Only the cprobit model was robust to skewed subject-specific intercept terms when a Box-Cox transformation was used. Using two real datasets from the breast cancer and inpatient glycemic variability studies which utilize electronic medical records, we illustrated the application of our proposed robust approach as a seamless three-step workflow that facilitates the use of Box-Cox transformation to address non-normality with a common underlying model.
CONCLUSIONS
The cprobit model provides a seamless and robust inference on the change in continuous outcomes, and its three-step workflow is implemented in an R package for easy accessibility.
Identifiants
pubmed: 32505178
doi: 10.1186/s12874-020-01027-6
pii: 10.1186/s12874-020-01027-6
pmc: PMC7275496
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
145Subventions
Organisme : Clinician Scientist Award-Senior Investigator Category, National Medical Research Council
ID : NMRC/CSA-SI/0015-2017
Pays : International
Organisme : NUS SSHSPH Research Programme - Breast Cancer Prevention Programme
ID : R-608-000-124-733
Pays : International
Organisme : NUS Asian Breast Cancer Research Fund
ID : N-176-000-023-091
Pays : International
Organisme : National Medical Research Council Centre Grant (CG) Programme
ID : CGAug16M005
Pays : International
Organisme : Swedish Cancer Society (Cancerfonden)
ID : CAN 2015/493
Pays : International
Organisme : Centre for Health Services and Policy Research, the National University Health Systems Pte Ltd
ID : SBRO14/NS01G
Pays : International
Organisme : National Medical Research Council of Singapore
ID : clinician scientist award scheme
Pays : International
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