Type 2 and interferon inflammation strongly regulate SARS-CoV-2 related gene expression in the airway epithelium.


Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
10 Apr 2020
Historique:
entrez: 9 6 2020
pubmed: 9 6 2020
medline: 9 6 2020
Statut: epublish

Résumé

Coronavirus disease 2019 (COVID-19) outcomes vary from asymptomatic infection to death. This disparity may reflect different airway levels of the SARS-CoV-2 receptor, ACE2, and the spike protein activator, TMPRSS2. Here we explore the role of genetics and co-expression networks in regulating these genes in the airway, through the analysis of nasal airway transcriptome data from 695 children. We identify expression quantitative trait loci (eQTL) for both

Identifiants

pubmed: 32511326
doi: 10.1101/2020.04.09.034454
pmc: PMC7239056
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIEHS NIH HHS
ID : R01 ES015794
Pays : United States
Organisme : NIEHS NIH HHS
ID : HHSN268201600032C
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL141992
Pays : United States
Organisme : NHLBI NIH HHS
ID : U01 HL120393
Pays : United States
Organisme : NHGRI NIH HHS
ID : UM1 HG008901
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL141845
Pays : United States
Organisme : NHLBI NIH HHS
ID : HHSN268201800001C
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG009080
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL128439
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL117626
Pays : United States
Organisme : NHGRI NIH HHS
ID : U24 HG008956
Pays : United States
Organisme : NHLBI NIH HHS
ID : U01 HL138626
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL120393
Pays : United States
Organisme : NHLBI NIH HHS
ID : P01 HL107202
Pays : United States
Organisme : NHLBI NIH HHS
ID : K01 HL140218
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL135156
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM007546
Pays : United States
Organisme : NHLBI NIH HHS
ID : R01 HL117004
Pays : United States
Organisme : NIMHD NIH HHS
ID : P60 MD006902
Pays : United States
Organisme : NHLBI NIH HHS
ID : P01 HL132821
Pays : United States
Organisme : NIMHD NIH HHS
ID : R01 MD010443
Pays : United States

Commentaires et corrections

Type : UpdateIn

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Auteurs

Satria P Sajuthi (SP)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.

Peter DeFord (P)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.

Nathan D Jackson (ND)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.

Michael T Montgomery (MT)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.

Jamie L Everman (JL)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.

Cydney L Rios (CL)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.

Elmar Pruesse (E)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.

James D Nolin (JD)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.

Elizabeth G Plender (EG)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.

Michael E Wechsler (ME)

Department of Medicine, National Jewish Health, Denver, CO, 80206 USA.

Angel Cy Mak (AC)

Department of Medicine, Therapeutic Sciences University of California San Francisco, San Francisco, CA.

Celeste Eng (C)

Department of Medicine, Therapeutic Sciences University of California San Francisco, San Francisco, CA.

Sandra Salazar (S)

Department of Medicine, Therapeutic Sciences University of California San Francisco, San Francisco, CA.

Vivian Medina (V)

Centro de Neumología Pediátrica, San Juan, Puerto Rico.

Eric M Wohlford (EM)

Department of Medicine, Therapeutic Sciences University of California San Francisco, San Francisco, CA.
Division of Pediatric Allergy and Immunology, Therapeutic Sciences University of California San Francisco, San Francisco, CA.

Scott Huntsman (S)

Department of Medicine, Therapeutic Sciences University of California San Francisco, San Francisco, CA.

Deborah A Nickerson (DA)

Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Northwest Genomics Center, Seattle, WA, USA.
Brotman Baty Institute, Seattle, WA, USA.

Soren Germer (S)

New York Genome Center, NYC, New York.

Michael C Zody (MC)

New York Genome Center, NYC, New York.

Gonçalo Abecasis (G)

Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.

Hyun Min Kang (HM)

Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.

Kenneth M Rice (KM)

Department of Biostatistics, University of Washington, Seattle, WA, USA.

Rajesh Kumar (R)

Ann and Robert H. Lurie Children's Hospital of Chicago, Department of Pediatrics, Northwestern University, Chicago, III.

Sam Oh (S)

Department of Medicine, Therapeutic Sciences University of California San Francisco, San Francisco, CA.

Jose Rodriguez-Santana (J)

Centro de Neumología Pediátrica, San Juan, Puerto Rico.

Esteban G Burchard (EG)

Department of Medicine, Therapeutic Sciences University of California San Francisco, San Francisco, CA.
Department of Bioengineering and Therapeutic Sciences University of California San Francisco, San Francisco, CA.

Max A Seibold (MA)

Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, 80206 USA.
Department of Pediatrics, National Jewish Health, Denver, CO, 80206 USA.
Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado-AMC, Aurora, CO, 80045 USA.

Classifications MeSH