Molecular characterisation of ILRUN, a novel inhibitor of proinflammatory and antimicrobial cytokines.

Biochemistry Biomolecules C6orf106 CBP ILRUN Immune response Immunolgy Infectious disease Inflammation Innate immunity Interferon Viruses p300

Journal

Heliyon
ISSN: 2405-8440
Titre abrégé: Heliyon
Pays: England
ID NLM: 101672560

Informations de publication

Date de publication:
Jun 2020
Historique:
received: 28 01 2020
revised: 28 04 2020
accepted: 28 05 2020
entrez: 11 6 2020
pubmed: 11 6 2020
medline: 11 6 2020
Statut: epublish

Résumé

Regulation of type-I interferon (IFN) production is essential to the balance between antimicrobial defence and autoimmune disorders. The human protein-coding gene ILRUN (inflammation and lipid regulator with UBA-like and NBR1-like domains, previously C6orf106) was recently characterised as an inhibitor of antiviral and proinflammatory cytokine (interferon-alpha/beta and tumor necrosis factor alpha) transcription. Currently there is a paucity of information about the molecular characteristics of ILRUN, despite it being associated with several diseases including virus infection, coronary artery disease, obesity and cancer. Here, we characterise ILRUN as a highly phylogenetically conserved protein containing UBA-like and a NBR1-like domains that are both essential for inhibition of type-I interferon and tumor necrosis factor alpha) transcription in human cells. We also solved the crystal structure of the NBR1-like domain, providing insights into its potential role in ILRUN function. This study provides critical information for future investigations into the role of ILRUN in health and disease.

Identifiants

pubmed: 32518853
doi: 10.1016/j.heliyon.2020.e04115
pii: S2405-8440(20)30959-2
pii: e04115
pmc: PMC7270589
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e04115

Informations de copyright

Crown Copyright © 2020 Published by Elsevier Ltd.

Références

J Biochem. 2017 Feb 1;161(2):113-124
pubmed: 28069863
mBio. 2017 Sep 26;8(5):
pubmed: 28951472
Nat Rev Immunol. 2015 Aug;15(8):471-85
pubmed: 26160613
Nat Biotechnol. 2014 Sep;32(9):903-14
pubmed: 25150838
J Immunol. 2007 Jun 15;178(12):7540-9
pubmed: 17548588
Mol Biol Evol. 2017 Aug 1;34(8):1974-1980
pubmed: 28444387
Protein Sci. 2018 Jan;27(1):293-315
pubmed: 29067766
Nucleic Acids Res. 2019 Jan 8;47(D1):D807-D811
pubmed: 30395283
Proteins. 2013 Feb;81(2):229-39
pubmed: 22972754
J Biol Chem. 2018 Feb 2;293(5):1745-1755
pubmed: 29222334
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42
pubmed: 21460441
J Cell Sci. 2001 Jul;114(Pt 13):2363-73
pubmed: 11559745
Nat Methods. 2015 Apr;12(4):339-42
pubmed: 25751143
Trends Immunol. 2017 Aug;38(8):542-557
pubmed: 28579323
Sci Signal. 2010 Jan 12;3(104):ra3
pubmed: 20068231
J Immunol. 2019 Apr 15;202(8):2195-2209
pubmed: 30850479
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Nat Commun. 2017 Nov 13;8(1):1443
pubmed: 29129929
Biochemistry. 2003 Nov 25;42(46):13529-35
pubmed: 14621999
J Autoimmun. 2017 Sep;83:1-11
pubmed: 28330758
Nat Med. 2017 Dec;23(12):1481-1487
pubmed: 29106401
J Mol Biol. 2002 Jun 21;319(5):1243-55
pubmed: 12079361
BMC Med Genet. 2010 Jun 14;11:96
pubmed: 20546612
Annu Rev Biochem. 2012;81:323-57
pubmed: 22404627
Cold Spring Harb Perspect Biol. 2014 Sep 04;6(10):a016295
pubmed: 25190079
Mol Cell Biol. 2010 Dec;30(24):5672-85
pubmed: 20937771
Nucleic Acids Res. 2012 Aug;40(15):7162-75
pubmed: 22570411
Pharmacogenomics J. 2017 Mar;17(2):137-145
pubmed: 26856248
Curr Opin Struct Biol. 2015 Dec;35:49-59
pubmed: 26402567
Semin Immunopathol. 2017 Jul;39(5):563-574
pubmed: 28401256
Circ Res. 2016 Jan 8;118(1):83-94
pubmed: 26487741
PLoS Genet. 2019 Jan 24;15(1):e1007603
pubmed: 30677029
PLoS Genet. 2018 Apr 2;14(4):e1007222
pubmed: 29608557
J Biol Chem. 2018 Jul 6;293(27):10561-10573
pubmed: 29802199
Cell Res. 2016 Apr;26(4):399-422
pubmed: 27012465
Ann Hum Genet. 2010 Nov;74(6):489-97
pubmed: 20846217
Nat Rev Immunol. 2015 Jul;15(7):405-14
pubmed: 26027717
J Biol Chem. 2016 Mar 25;291(13):6696-705
pubmed: 26851279
Cell Mol Life Sci. 2013 Nov;70(21):3989-4008
pubmed: 23307074
Oncotarget. 2015 Feb 28;6(6):3627-43
pubmed: 25682867
Proc Natl Acad Sci U S A. 2018 Sep 25;115(39):E9162-E9171
pubmed: 30201712
Prostate. 2012 May 1;72(6):592-6
pubmed: 21796651
PLoS One. 2014 Mar 19;9(3):e92111
pubmed: 24647608
BMC Mol Biol. 2006 Oct 12;7:35
pubmed: 17038175
Biol Reprod. 2006 Sep;75(3):318-23
pubmed: 16723505
Oncogene. 2004 May 24;23(24):4225-31
pubmed: 15156177
Trends Immunol. 2013 Feb;34(2):67-73
pubmed: 23122052
Cell Mol Life Sci. 2016 Nov;73(21):4075-84
pubmed: 27229125
Nat Rev Genet. 2019 Nov;20(11):657-674
pubmed: 31358977
Nat Commun. 2019 Jan 2;10(1):9
pubmed: 30602780
J Leukoc Biol. 2015 Jun;97(6):1139-46
pubmed: 25784743
PLoS One. 2015 Oct 07;10(10):e0140049
pubmed: 26444573
Nucleic Acids Res. 2016 Dec 1;44(21):10201-10215
pubmed: 27543075
Tumour Biol. 2015 Aug;36(8):5979-85
pubmed: 25736925
Cell. 2014 Jul 31;158(3):593-606
pubmed: 25083870
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):368-80
pubmed: 22505257
J Exp Med. 2016 Nov 14;213(12):2527-2538
pubmed: 27821552
Genome Biol. 2016 Jan 29;17:14
pubmed: 26821746
Sci Rep. 2017 Jul 18;7(1):5702
pubmed: 28720766
J Leukoc Biol. 2019 Feb;105(2):353-361
pubmed: 30549324
Mol Cell Biochem. 2019 Apr;454(1-2):87-95
pubmed: 30311108
Sci Rep. 2016 Mar 21;6:23377
pubmed: 26996158
Cell Metab. 2017 Jul 5;26(1):171-184.e6
pubmed: 28683285
Sci Rep. 2017 Dec 12;7(1):17452
pubmed: 29234122
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
pubmed: 20124692
Nat Rev Immunol. 2015 Feb;15(2):87-103
pubmed: 25614319
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):293-302
pubmed: 21460447
Int J Cell Biol. 2012;2012:208014
pubmed: 22654911
J Proteome Res. 2013 Jan 4;12(1):260-71
pubmed: 23186163
Cell Syst. 2016 Oct 26;3(4):385-394.e3
pubmed: 27693023
Immunity. 2006 Sep;25(3):373-81
pubmed: 16979569
Sci Signal. 2009 Aug 18;2(84):ra46
pubmed: 19690332
J Biol Regul Homeost Agents. 2019 Jan 18;33(1):1-6
pubmed: 30656901
Immunology. 2003 Sep;110(1):38-47
pubmed: 12941139
Cell Immunol. 2018 Aug;330:120-125
pubmed: 29650243
Cell Prolif. 2018 Aug;51(4):e12441
pubmed: 29484738
Clin Immunol. 2018 Dec;197:19-26
pubmed: 30056130
Cell Mol Immunol. 2016 Jan;13(1):3-10
pubmed: 26189369
Int J Obes (Lond). 2016 Sep;40(9):1346-52
pubmed: 27121252
Biochim Biophys Acta Gene Regul Mech. 2019 Jun;1862(6):634-642
pubmed: 31042550
PLoS One. 2013 Aug 09;8(8):e71320
pubmed: 23951133
Tumour Biol. 2015 Sep;36(10):7881-9
pubmed: 25953261
J Immunol. 2016 Aug 1;197(3):923-33
pubmed: 27342840
J Proteomics. 2016 Jan 1;130:76-84
pubmed: 26376097
Proc Natl Acad Sci U S A. 2014 May 20;111(20):7409-14
pubmed: 24799699
J Allergy Clin Immunol. 2018 Nov;142(5):1605-1617.e4
pubmed: 29447842
Nat Immunol. 2017 Oct;18(10):1104-1116
pubmed: 28825701
Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):E3798-E3807
pubmed: 29610295
Sci Rep. 2016 Sep 01;6:32526
pubmed: 27580796
Sci Immunol. 2016 Nov;1(5):
pubmed: 28664195
PLoS Genet. 2009 Mar;5(3):e1000409
pubmed: 19266077
JCI Insight. 2018 Sep 20;3(18):
pubmed: 30232284
Nature. 2015 Feb 12;518(7538):197-206
pubmed: 25673413
Nat Rev Mol Cell Biol. 2015 Jan;16(1):18-29
pubmed: 25531225
Sci Signal. 2011 Mar 15;4(164):rs3
pubmed: 21406692
Nat Commun. 2018 Apr 10;9(1):1366
pubmed: 29636450
Nat Struct Biol. 2002 Apr;9(4):247-51
pubmed: 11875519
PLoS Genet. 2016 Sep 30;12(9):e1006338
pubmed: 27690314
Proteins. 2012 Jul;80(7):1715-35
pubmed: 22411565

Auteurs

Rebecca L Ambrose (RL)

CSIRO Health & Biosecurity, Australian Centre for Disease Preparedness, Geelong, Victoria, 3220, Australia.

Aaron M Brice (AM)

CSIRO Health & Biosecurity, Australian Centre for Disease Preparedness, Geelong, Victoria, 3220, Australia.

Alessandro T Caputo (AT)

CSIRO Manufacturing, Parkville, Victoria, 3010, Australia.

Marina R Alexander (MR)

CSIRO Health & Biosecurity, Australian Centre for Disease Preparedness, Geelong, Victoria, 3220, Australia.

Leon Tribolet (L)

CSIRO Health & Biosecurity, Australian Centre for Disease Preparedness, Geelong, Victoria, 3220, Australia.

Yu Chih Liu (YC)

CSIRO Manufacturing, Parkville, Victoria, 3010, Australia.

Timothy E Adams (TE)

CSIRO Manufacturing, Parkville, Victoria, 3010, Australia.

Andrew G D Bean (AGD)

CSIRO Health & Biosecurity, Australian Centre for Disease Preparedness, Geelong, Victoria, 3220, Australia.

Cameron R Stewart (CR)

CSIRO Health & Biosecurity, Australian Centre for Disease Preparedness, Geelong, Victoria, 3220, Australia.

Classifications MeSH