Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-16.
HCoV-OC43
Kenya
epidemiology
evolutionary dynamics
spike
Journal
Virus evolution
ISSN: 2057-1577
Titre abrégé: Virus Evol
Pays: England
ID NLM: 101664675
Informations de publication
Date de publication:
Jan 2020
Jan 2020
Historique:
entrez:
12
6
2020
pubmed:
12
6
2020
medline:
12
6
2020
Statut:
epublish
Résumé
Human coronavirus OC43 (HCoV-OC43) is a major contributor to seasonal outbreaks of acute respiratory illness (ARI). The origins of locally circulating HCoV-OC43 strains and characteristics of their genetic diversity are unknown for most settings despite significance to effective HCoV control strategies. Between December 2015 and June 2016, we undertook ARI surveillance in coastal Kenya in nine outpatients and one inpatient health facility (HF). Ninety-two patient samples tested HCoV-OC43 positive and forty (43.5%) were successfully sequenced in spike (S) gene region (2,864 long, ∼70%). Phylogenetic analysis confirmed co-circulation of two distinct HCoV-OC43 clades that closely clustered with genotype G (
Identifiants
pubmed: 32523779
doi: 10.1093/ve/veaa031
pii: veaa031
pmc: PMC7266483
doi:
Types de publication
Journal Article
Langues
eng
Pagination
veaa031Subventions
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : EPA
ID : EP-C-15-003
Pays : United States
Informations de copyright
© The Author(s) 2020. Published by Oxford University Press.
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