Efficient Algorithm for the Topological Characterization of Worm-like and Branched Micelle Structures from Simulations.


Journal

Journal of chemical theory and computation
ISSN: 1549-9626
Titre abrégé: J Chem Theory Comput
Pays: United States
ID NLM: 101232704

Informations de publication

Date de publication:
14 Jul 2020
Historique:
pubmed: 17 6 2020
medline: 17 6 2020
entrez: 17 6 2020
Statut: ppublish

Résumé

Many surfactant-based formulations are utilized in industry as they produce desirable viscoelastic properties at low concentrations. These properties are due to the presence of worm-like micelles (WLMs), and as a result, understanding the processes that lead to WLM formation is of significant interest. Various experimental techniques have been applied with some success to this problem but can encounter issues probing key microscopic characteristics or the specific regimes of interest. The complementary use of computer simulations could provide an alternate route to accessing their structural and dynamic behavior. However, few computational methods exist for measuring key characteristics of WLMs formed in particle simulations. Further, their mathematical formulations are challenged by WLMs with sharp curvature profiles or density fluctuations along the backbone. Here, we present a new topological algorithm for identifying and characterizing WLMs in particle simulations, which has desirable mathematical properties that address shortcomings in previous techniques. We apply the algorithm to the case of sodium dodecyl sulfate micelles to demonstrate how it can be used to construct a comprehensive topological characterization of the observed structures.

Identifiants

pubmed: 32543855
doi: 10.1021/acs.jctc.0c00311
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

4588-4598

Auteurs

Breanndan O Conchuir (BO)

IBM Research Europe, The Hartree Centre, Daresbury WA4 4AD, U.K.

Kirk Gardner (K)

Department of Computer Science & Engineering, University of Connecticut, Storrs, Connecticut 06269, United States.

Kirk E Jordan (KE)

IBM T. J. Watson Research, Cambridge, Massachusetts 02142, United States.

David J Bray (DJ)

The Hartree Centre, STFC Daresbury Laboratory, Warrington WA4 4AD, U.K.

Richard L Anderson (RL)

The Hartree Centre, STFC Daresbury Laboratory, Warrington WA4 4AD, U.K.

Michael A Johnston (MA)

IBM Research Europe, Dublin 15, Ireland.

William C Swope (WC)

IBM Almaden Research Center, San Jose, California 95120, United States.

Alex Harrison (A)

IBM Research Europe, The Hartree Centre, Daresbury WA4 4AD, U.K.

Donald R Sheehy (DR)

Department of Computer Science, North Carolina State University, Raleigh, North Carolina 27695, United States.

Thomas J Peters (TJ)

Department of Computer Science & Engineering, University of Connecticut, Storrs, Connecticut 06269, United States.

Classifications MeSH