Toward a principled Bayesian workflow in cognitive science.


Journal

Psychological methods
ISSN: 1939-1463
Titre abrégé: Psychol Methods
Pays: United States
ID NLM: 9606928

Informations de publication

Date de publication:
Feb 2021
Historique:
pubmed: 20 6 2020
medline: 21 10 2021
entrez: 20 6 2020
Statut: ppublish

Résumé

Experiments in research on memory, language, and in other areas of cognitive science are increasingly being analyzed using Bayesian methods. This has been facilitated by the development of probabilistic programming languages such as Stan, and easily accessible front-end packages such as brms. The utility of Bayesian methods, however, ultimately depends on the relevance of the Bayesian model, in particular whether or not it accurately captures the structure of the data and the data analyst's domain expertise. Even with powerful software, the analyst is responsible for verifying the utility of their model. To demonstrate this point, we introduce a principled Bayesian workflow (Betancourt, 2018) to cognitive science. Using a concrete working example, we describe basic questions one should ask about the model: prior predictive checks, computational faithfulness, model sensitivity, and posterior predictive checks. The running example for demonstrating the workflow is data on reading times with a linguistic manipulation of object versus subject relative clause sentences. This principled Bayesian workflow also demonstrates how to use domain knowledge to inform prior distributions. It provides guidelines and checks for valid data analysis, avoiding overfitting complex models to noise, and capturing relevant data structure in a probabilistic model. Given the increasing use of Bayesian methods, we aim to discuss how these methods can be properly employed to obtain robust answers to scientific questions. All data and code accompanying this article are available from https://osf.io/b2vx9/. (PsycInfo Database Record (c) 2021 APA, all rights reserved).

Identifiants

pubmed: 32551748
pii: 2020-43606-001
doi: 10.1037/met0000275
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

103-126

Subventions

Organisme : Deutsche Forschungsgemeinschaft

Auteurs

Daniel J Schad (DJ)

Research Focus Cognitive Sciences, University of Potsdam.

Shravan Vasishth (S)

RF Cognitive Sciences, University of Potsdam.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH