Generative modeling of brain maps with spatial autocorrelation.

Gene set enrichment analysis Generative null modeling Large-scale gradients Spatial autocorrelation

Journal

NeuroImage
ISSN: 1095-9572
Titre abrégé: Neuroimage
Pays: United States
ID NLM: 9215515

Informations de publication

Date de publication:
15 10 2020
Historique:
received: 18 02 2020
revised: 02 06 2020
accepted: 05 06 2020
pubmed: 26 6 2020
medline: 23 2 2021
entrez: 26 6 2020
Statut: ppublish

Résumé

Studies of large-scale brain organization have revealed interesting relationships between spatial gradients in brain maps across multiple modalities. Evaluating the significance of these findings requires establishing statistical expectations under a null hypothesis of interest. Through generative modeling of synthetic data that instantiate a specific null hypothesis, quantitative benchmarks can be derived for arbitrarily complex statistical measures. Here, we present a generative null model, provided as an open-access software platform, that generates surrogate maps with spatial autocorrelation (SA) matched to SA of a target brain map. SA is a prominent and ubiquitous property of brain maps that violates assumptions of independence in conventional statistical tests. Our method can simulate surrogate brain maps, constrained by empirical data, that preserve the SA of cortical, subcortical, parcellated, and dense brain maps. We characterize how SA impacts p-values in pairwise brain map comparisons. Furthermore, we demonstrate how SA-preserving surrogate maps can be used in gene set enrichment analyses to test hypotheses of interest related to brain map topography. Our findings demonstrate the utility of SA-preserving surrogate maps for hypothesis testing in complex statistical analyses, and underscore the need to disambiguate meaningful relationships from chance associations in studies of large-scale brain organization.

Identifiants

pubmed: 32585343
pii: S1053-8119(20)30524-3
doi: 10.1016/j.neuroimage.2020.117038
pii:
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

117038

Subventions

Organisme : NIMH NIH HHS
ID : R01 MH108590
Pays : United States
Organisme : NIAAA NIH HHS
ID : P50 AA012870
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH112746
Pays : United States
Organisme : NIMH NIH HHS
ID : U01 MH121766
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH112189
Pays : United States

Informations de copyright

Copyright © 2020. Published by Elsevier Inc.

Déclaration de conflit d'intérêts

Declaration of competing interest M.H. and M.S. declare no competing interests. J.B.B. consults for Blackthorn Therapeutics. A.A. and J.D.M. consult for and hold equity with Blackthorn Therapeutics.

Auteurs

Joshua B Burt (JB)

Yale University, Department of Physics, USA.

Markus Helmer (M)

Yale University, Department of Psychiatry, USA.

Maxwell Shinn (M)

Yale University, Interdepartmental Neuroscience Program, USA.

Alan Anticevic (A)

Yale University, Department of Psychiatry, USA; Yale University, Interdepartmental Neuroscience Program, USA.

John D Murray (JD)

Yale University, Department of Physics, USA; Yale University, Department of Psychiatry, USA; Yale University, Interdepartmental Neuroscience Program, USA. Electronic address: john.murray@yale.edu.

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Classifications MeSH