Generative modeling of brain maps with spatial autocorrelation.
Gene set enrichment analysis
Generative null modeling
Large-scale gradients
Spatial autocorrelation
Journal
NeuroImage
ISSN: 1095-9572
Titre abrégé: Neuroimage
Pays: United States
ID NLM: 9215515
Informations de publication
Date de publication:
15 10 2020
15 10 2020
Historique:
received:
18
02
2020
revised:
02
06
2020
accepted:
05
06
2020
pubmed:
26
6
2020
medline:
23
2
2021
entrez:
26
6
2020
Statut:
ppublish
Résumé
Studies of large-scale brain organization have revealed interesting relationships between spatial gradients in brain maps across multiple modalities. Evaluating the significance of these findings requires establishing statistical expectations under a null hypothesis of interest. Through generative modeling of synthetic data that instantiate a specific null hypothesis, quantitative benchmarks can be derived for arbitrarily complex statistical measures. Here, we present a generative null model, provided as an open-access software platform, that generates surrogate maps with spatial autocorrelation (SA) matched to SA of a target brain map. SA is a prominent and ubiquitous property of brain maps that violates assumptions of independence in conventional statistical tests. Our method can simulate surrogate brain maps, constrained by empirical data, that preserve the SA of cortical, subcortical, parcellated, and dense brain maps. We characterize how SA impacts p-values in pairwise brain map comparisons. Furthermore, we demonstrate how SA-preserving surrogate maps can be used in gene set enrichment analyses to test hypotheses of interest related to brain map topography. Our findings demonstrate the utility of SA-preserving surrogate maps for hypothesis testing in complex statistical analyses, and underscore the need to disambiguate meaningful relationships from chance associations in studies of large-scale brain organization.
Identifiants
pubmed: 32585343
pii: S1053-8119(20)30524-3
doi: 10.1016/j.neuroimage.2020.117038
pii:
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
117038Subventions
Organisme : NIMH NIH HHS
ID : R01 MH108590
Pays : United States
Organisme : NIAAA NIH HHS
ID : P50 AA012870
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH112746
Pays : United States
Organisme : NIMH NIH HHS
ID : U01 MH121766
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH112189
Pays : United States
Informations de copyright
Copyright © 2020. Published by Elsevier Inc.
Déclaration de conflit d'intérêts
Declaration of competing interest M.H. and M.S. declare no competing interests. J.B.B. consults for Blackthorn Therapeutics. A.A. and J.D.M. consult for and hold equity with Blackthorn Therapeutics.