Uncovered Microbial Diversity in Antarctic Cryptoendolithic Communities Sampling three Representative Locations of the Victoria Land.

Antarctica amplicon sequencing bacteria endolithic communities fungi habitat sampling effort

Journal

Microorganisms
ISSN: 2076-2607
Titre abrégé: Microorganisms
Pays: Switzerland
ID NLM: 101625893

Informations de publication

Date de publication:
23 Jun 2020
Historique:
received: 03 06 2020
revised: 21 06 2020
accepted: 22 06 2020
entrez: 27 6 2020
pubmed: 27 6 2020
medline: 27 6 2020
Statut: epublish

Résumé

The endolithic niche represents an ultimate refuge to microorganisms in the Mars-like environment of the Antarctic desert. In an era of rapid global change and desertification, the interest in these border ecosystems is increasing due to speculation on how they maintain balance and functionality at the dry limits of life. To assure a reliable estimation of microbial diversity, proper sampling must be planned in order to avoid the necessity of re-sampling as reaching these remote locations is risky and requires tremendous logistical and economical efforts. In this study, we seek to determine the minimum number of samples for uncovering comprehensive bacterial and fungal diversity, comparing communities in strict vicinity to each other. We selected three different locations of the Victoria Land (Continental Antarctica) at different altitudes and showing sandstone outcrops of a diverse nature and origin-Battleship promontory (834 m above sea level (a.s.l.), Southern VL), Trio Nunatak (1,470 m a.s.l., Northern VL) and Mt New Zealand (3,100 m a.s.l., Northern VL). Overall, we found that a wider sampling would be required to capture the whole amplitude of microbial diversity, particularly in Northern VL. We concluded that the inhomogeneity of the rock matrix and the stronger environmental pressure at higher altitudes may force the communities to a higher local diversification.

Identifiants

pubmed: 32585947
pii: microorganisms8060942
doi: 10.3390/microorganisms8060942
pmc: PMC7356261
pii:
doi:

Types de publication

Journal Article

Langues

eng

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Auteurs

Claudia Coleine (C)

Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.

Nuttapon Pombubpa (N)

Department of Microbiology and Plant Pathology, University of California, Riverside, Riverside 92521, CA, USA.

Laura Zucconi (L)

Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.

Silvano Onofri (S)

Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.

Benedetta Turchetti (B)

Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06121 Perugia, Italy.

Pietro Buzzini (P)

Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06121 Perugia, Italy.

Jason E Stajich (JE)

Department of Microbiology and Plant Pathology, University of California, Riverside, Riverside 92521, CA, USA.

Laura Selbmann (L)

Department of Ecological and Biological Sciences, University of Tuscia, 01100 Viterbo, Italy.
Italian National Antarctic Museum (MNA), Mycological Section, 16166 Genoa, Italy.

Classifications MeSH