Have an Ion on It: The Life-Cycle of Bdellovibrio bacteriovorus Viewed by Helium-Ion Microscopy.

BALO Bdellovibrio helium-ion microscopy microbial predation retarded differential equations

Journal

Advanced biosystems
ISSN: 2366-7478
Titre abrégé: Adv Biosyst
Pays: Germany
ID NLM: 101711718

Informations de publication

Date de publication:
Jan 2019
Historique:
received: 20 08 2018
revised: 11 10 2018
entrez: 7 7 2020
pubmed: 1 1 2019
medline: 1 1 2019
Statut: ppublish

Résumé

Helium-ion microscopy (HIM) has so far rarely been employed to image microbial interactions. Here, the visualization of the life-cycle of the bacterial predator Bdellovibrio bacteriovorus HD100 with Escherichia coli and Pseudomonas putida, respectively, as prey is presented. The predator is brought in contact with prey and samples are taken at selected times. The system is monitored by phase-contrast microscopy and HIM. For HIM imaging, a sample preparation protocol is established that preserves the structure of Bdellovibrio, prey, and bdelloplasts. The micrographs show the attachment of the predator to its prey, the evolution of bdelloplasts, their lysis, and the release of predator progeny. The combination of HIM with two more approaches allows for investigating predator-prey interactions from different angles: First, phase-contrast micrographs provide quantitative information for the numbers of predator, prey, and bdelloplasts. Second, a numerical model solving the retarded differential equations that describe the system's time-evolution is developed and fits the experimentally determined cell numbers. In conclusion, the high resolution, the large depth of focus, and surface sensitivity of HIM hold promise to expand future studies on so far neglected ecological interactions within the microbial food web, in particular in samples with pronounced topography such as bacterial biofilms.

Identifiants

pubmed: 32627346
doi: 10.1002/adbi.201800250
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1800250

Subventions

Organisme : European Regional Development Funds (EFRE - Europe funds Saxony)
Organisme : Alexander von Humboldt Foundation

Informations de copyright

© 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Références

B. Ward, J. A. Notte, N. P. Economou, Photonics Spectra 2007, 41, 68.
L. Scipioni, L. A. Stern, J. Notte, S. Sijbrandij, B. Griffin, Adv. Mater. Processes 2008, 166, 27.
N. P. Economou, J. A. Notte, W. B. Thompson, Scanning 2012, 34, 83.
L. Scipioni, W. Thompson, S. Sijbrandij, S. Ogawa, in 2009 IEEE Int. Reliability Phys. Symp., IEEE, Montreal, QC, 2009, pp. 317-321.
P. F. Alkemade, E. M. Koster, E. van Veldhoven, D. J. Maas, Scanning 2012, 34, 90.
M. M. Marshall, J. Yang, A. R. Hall, Scanning 2012, 34, 101.
M. S. Joens, C. Huynh, J. M. Kasuboski, D. Ferranti, Y. J. Sigal, F. Zeitvogel, M. Obst, C. J. Burkhardt, K. P. Curran, S. H. Chalasani, L. A. Stern, B. Goetze, J. A. J. Fitzpatrick, Sci. Rep. 2013, 3, 3514.
D. Bazou, G. Behan, C. Reid, J. J. Boland, H. Z. Zhang, J. Microsc. 2011, 242, 290.
G. Koschek, M. Eder, A. Schneemann, Imaging Microsc. 2016.
G. R. Glauber, G. N. Fontes, D. Leão, G. M. Rocha, B. Pontes, C. S. Anna, W. de Souza, S. Frases, J. Struct. Biol. 2016, 193, 75.
J. M. Byrne, M. Schmidt, T. Gauger, C. Bryce, A. Kappler, Environ. Sci. Technol. Lett. 2018, 5, 209.
M. Leppänen, L. R. Sundberg, E. Laanto, G. M. de Almeida, P. Papponen, I. J. Maasilta, Adv. Biosyst. 2017, 1, 1700070.
J. Johnke, Y. Cohen, M. Leeuw, A. Kushmaro, E. Jurkevitch, A. Chatzinotas, Curr. Opin. Biotechnol. 2014, 27, 185.
S. M. Geisen, Edward, D. Wilkinson, S. Adl, M. Bonkowski, M. Brown, A. M. Fiore-Donno, T. Heger, V. Jassey, V. Krashevska, D. Lahr, K. Marcisz, M. Mulot, R. Payne, D. Singer, O. Anderson, D. Charman, F. Ekelund, S. Griffiths, Bryan, E. Lara, Soil Biol. Biochem. 2017, 111, 94.
W. D. Orsi, S. Wilken, J. del Campo, T. Heger, E. James, T. A. Richards, P. J. Keeling, A. Z. Worden, A. E. Santoro, Environ. Microbiol. 2018, 20, 815.
Z. Erez, I. Steinberger-Levy, M. Shamir, S. Doron, A. Stokar-Avihail, Y. Peleg, S. Melamed, A. Leavitt, A. Savidor, S. Albeck, G. Amitai, R. Sorek, Nature 2017, 541, 488.
M. Breitbart, C. Bonnain, K. Malki, N. A. Sawaya, Nat. Microbiol. 2018, 3, 754.
Z. Pasternak, M. Njagi, Y. Shani, R. Chanyi, O. Rotem, M. N. Lurie-Weinberger, S. Koval, S. Pietrokovski, U. Gophna, E. Jurkevitch, ISME J. 2014, 8, 625.
H. Stolp, M. P. Starr, J. Microbiol. 1963, 29, 217.
M. P. Starr, N. L. Baigent, J. Bacteriol. 1966, 91, 2006.
M. P. Starr, R. J. Seidler, Annu. Rev. Microbiol. 1971, 25, 649.
H. Stolp, Annu. Rev. Phytopathol. 1973, 11, 53.
R. E. Sockett, Annu. Rev. Microbiol. 2009, 63, 523.
A. K. Fenton, M. Kanna, R. D. Woods, S.-I. Aizawa, R. E. Sockett, J. Bacteriol. 2010, 192, 6329.
H. Chen, R. Athar, G. Zheng, H. N. Williams, ISME J. 2011, 5, 1314.
H. Chen, H. N. Williams, MBio. 2012, 3, e00051-12.
H. N. Williams, D. S. Lymperopoulou, R. Athar, A. Chauhan, T. L. Dickerson, H. Chen, E. Laws, T. K. Berhane, A. R. Flowers, N. Bradley, S. Young, D. Blackwood, J. Murray, O. Mustapha, C. Blackwell, Y. Tung, R. T. Noble, ISME J. 2016, 10, 491.
M. Dwidar, A. K. Monnappa, R. J. Mitchell, BMB Rep. 2012, 45, 71.
V. Iebba, F. Santangelo, V. Totino, M. Nicoletti, A. Gagliardi, R. V. De Biase, S. Cucchiara, L. Nencioni, M. P. Conte, S. Schippa, PLoS One 2013, 8, e61608.
R. Scherff, Phytopathology 1973, 63, 400.
P. C. Fratamico, P. H. Cooke, Food Safety, Purdue University, West Lafayette, 1996, pp. 16.
M. P. Starr, N. L. Baigent, J. Bacteriol. 1966, 91, 2006.
J. C. Burnham, T. Hashimoto, S. F. Conti, J. Bacteriol. 1968, 96, 1366.
J. C. Burnham, T. Hashimoto, S. F. Conti, J. Bacteriol. 1970, 101, 997.
K. J. Evans, C. Lambert, R. E. Sockett, J. Bacteriol. 2007, 189, 4850.
M. E. Núñez, M. O. Martin, P. H. Chan, E. M. Spain, Colloids Surf., B 2005, 42, 263.
M. J. Borgnia, S. Subramaniam, J. L. S. Milne, J. Bacteriol. 2008, 190, 2588.
F. H. M. Rahman, S. McVey, L. Farkas, J. A. Notte, S. Tan, R. H. Livengood, Scanning 2012, 34, 129.
L. S. Thomashow, S. C. Rittenberg, J. Bacteriol. 1985, 163, 1047.
M. F. Thomashow, S. C. Rittenberg, J. Bacteriol. 1978, 135, 1015.
J. Schindelin, I. Arganda-Carreras, E. Frise, V. Kaynig, M. Longair, T. Pietzsch, S. Preibisch, C. Rueden, S. Saalfeld, B. Schmid, J. Y. Tinevez, D. J. White, V. Hartenstein, K. Eliceiri, P. Tomancak, A. Cardona, Nat. Methods 2012, 9, 676.
C. A. Schneider, W. S. Rasband, K. W. Eliceiri, Nat. Methods 2012, 9, 671.

Auteurs

Nedal Said (N)

Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research - UFZ, Permoserstrasse 15, 04318, Leipzig, Germany.

Antonis Chatzinotas (A)

Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ, Permoserstrasse 15, 04318, Leipzig, Germany.
German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103, Leipzig, Germany.

Matthias Schmidt (M)

Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research - UFZ, Permoserstrasse 15, 04318, Leipzig, Germany.

Classifications MeSH