Fast motion of molecular rotors in metal-organic framework struts at very low temperatures.


Journal

Nature chemistry
ISSN: 1755-4349
Titre abrégé: Nat Chem
Pays: England
ID NLM: 101499734

Informations de publication

Date de publication:
09 2020
Historique:
received: 05 08 2019
accepted: 27 05 2020
pubmed: 8 7 2020
medline: 8 7 2020
entrez: 8 7 2020
Statut: ppublish

Résumé

The solid state is typically not well suited to sustaining fast molecular motion, but in recent years a variety of molecular machines, switches and rotors have been successfully engineered within porous crystals and on surfaces. Here we show a fast-rotating molecular rotor within the bicyclopentane-dicarboxylate struts of a zinc-based metal-organic framework-the carboxylate groups anchored to the metal clusters act as an axle while the bicyclic unit is free to rotate. The three-fold bipyramidal symmetry of the rotator conflicts with the four-fold symmetry of the struts within the cubic crystal cell of the zinc metal-organic framework. This frustrates the formation of stable conformations, allowing for the continuous, unidirectional, hyperfast rotation of the bicyclic units with an energy barrier of 6.2 cal mol

Identifiants

pubmed: 32632187
doi: 10.1038/s41557-020-0495-3
pii: 10.1038/s41557-020-0495-3
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

845-851

Références

Saibil, H. Chaperone machines for protein folding, unfolding and disaggregation. Nat. Rev. Mol. Cell Biol. 14, 630–642 (2013).
pubmed: 24026055 pmcid: 4340576
Kinbara, K. & Aida, T. Towards intelligent molecular machines: Directed motions of biological and artificial molecules and assemblies. Chem. Rev. 105, 1377–1400 (2005).
pubmed: 15826015
Olesen, C. et al. The structural basis of calcium transport by the calcium pump. Nature 450, 1036–1042 (2007).
pubmed: 18075584
Howard, J., Hudspeth, A. J. & Vale, R. D. Movement of microtubules by single kinesin molecules. Nature 342, 154–158 (1989).
pubmed: 2530455
Preben Morth, J. et al. A structural overview of the plasma membrane Na
pubmed: 21179061
Vogelsberg, C. S. & Garcia-Garibay, M. A. Crystalline molecular machines: function, phase order, dimensionality, and composition. Chem. Soc. Rev. 41, 1892–1910 (2012).
pubmed: 22012174
Bracco, S., Comotti, A. & Sozzani, P. Molecular rotors built in porous materials. Acc. Chem. Res. 49, 1701–1710 (2016).
pubmed: 27541838
Danowski, W. et al. Unidirectional rotary motion in a metal-organic framework. Nat. Nanotechnol. 488, 488–494 (2019).
Deng, H., Olson, M. A., Stoddart, J. F. & Yaghi, O. M. Robust dynamics. Nat. Chem. 2, 439–443 (2010).
pubmed: 20489710
Zhu, K., O’Keefe, C. A., Vukotic, V. N., Schurko, R. W. & Loeb, S. J. A molecular shuttle that operates inside a metal-organic framework. Nat. Chem. 7, 514–519 (2015).
pubmed: 25991531
Kobr, L. et al. Inclusion compound based approach to arrays of artificial dipolar molecular rotors. A surface inclusion. J. Am. Chem. Soc. 134, 10122–10131 (2012).
pubmed: 22651228
Inukai, M. et al. Control of molecular rotor rotational frequencies in porous coordination polymers using a solid-solution approach. J. Am. Chem. Soc. 137, 12183–12186 (2015).
pubmed: 26368067
Vogelsberg, C. S. et al. Ultrafast rotation in an amphidynamic crystalline metal organic framework. Proc. Natl Acad. Sci. USA 114, 13613–13618 (2017).
pubmed: 29229859
Michl, J., Charles, E. & Sykes, H. Molecular rotors and motors: recent advances and future challenges. ACS Nano 3, 1042–1048 (2009).
pubmed: 19845364
Prokop, A., Vacek, J. & Michl, J. Friction in carborane-based molecular rotors driven by gas flow or electric field: classical molecular dynamics. ACS Nano 6, 1901–1914 (2012).
pubmed: 22299637
Coskun, A., Banaszak, M., Astumian, R. D., Stoddart, J. F. & Grzybowski, B. A. Great expectations: can artificial molecular machines deliver on their promise? Chem. Soc. Rev. 41, 19–30 (2012).
pubmed: 22116531
Steuerman, D. W. et al. Molecular-mechanical switch-based solid-state electrochromic devices. Angew. Chem. Int. Ed. 43, 6486–6491 (2004).
Collier, C. P. et al. A [2]catenane-based solid state electronically reconfigurable switch. Science 289, 1172–1175 (2000).
pubmed: 10947980
Kaleta, J. et al. Surface inclusion of unidirectional molecular motors in hexagonal tris(o‑phenylene) cyclotriphosphazene. J. Am. Chem. Soc. 139, 10486–10498 (2017).
pubmed: 28654753
Jiang, X. et al. Crystal fluidity reflected by fast rotational motion at the core, branches, and peripheral aromatic groups of a dendrimeric molecular rotor. J. Am. Chem. Soc. 138, 4650–4656 (2016).
pubmed: 26973017 pmcid: 5155508
Comotti, A., Bracco, S., Ben, T., Qiu, S. & Sozzani, P. Molecular rotors in porous organic frameworks. Angew. Chem. Int. Ed. 53, 1043–1047 (2014).
Comotti, A. et al. & . Engineering switchable rotors in molecular crystals with open porosity. J. Am. Chem. Soc. 136, 618–621 (2014).
pubmed: 24377369
Bracco, S. et al. CO
Bracco, S. et al. Ultrafast molecular rotors and their CO
pubmed: 28675765
Bracco, S. et al. & . Dipolar rotors orderly aligned in mesoporous fluorinated organosilica architectures. Angew. Chem. Int. Ed. 54, 4773–4777 (2015).
Horike, S. et al. & . Dynamic motion of building blocks in porous coordination polymers. Angew. Chem. Int. Ed. 45, 7226–7230 (2006).
Zhu, K., Vukotic, V. N., Okeefe, C. A., Schurko, R. W. & Loeb, S. J. Metal–organic frameworks with mechanically interlocked pillars: controlling ring dynamics in the solid-state via a reversible phase change. J. Am. Chem. Soc. 136, 7403–7409 (2014).
pubmed: 24761935
Elsaidi, S. K. et al. Effect of ring rotation upon gas adsorption in SIFSIX-3-M (M = Fe, Ni) pillared square grid networks. Chem. Sci. 8, 2373–2380 (2017).
pubmed: 28451342
Gonzalez-Nelson, A., Coudert, F. X. & van der Veen, M. Rotational dynamics of linkers in metal–organic frameworks. Nanomaterials 9, 330–366 (2019).
pmcid: 6474009
Li, H., Eddaoudi, M., O’Keeffe, M. & Yaghi, O. M. Design and synthesis of an exceptionally stable and highly porous metal–organic framework. Nature 402, 276–279 (1999).
Cavka, J. H. et al. & . A new zirconium inorganic building brick forming metal–organic frameworks with exceptional stability. J. Am. Chem. Soc. 130, 13850–13851 (2008).
pubmed: 18817383
Yuan, S., Qin, J.-S., Lollar, C. T. & Zhou, H.-C. Stable metal−organic frameworks with group 4 metals: Current status and trends. ACS Cent. Sci. 4, 440–450 (2018).
pubmed: 29721526 pmcid: 5920617
Owen, N. L. in Internal Rotation in Molecules (ed. Orville‐Thomas, W. J.) Ch. 6 (Wiley, 1974).
Nakagawa, J. & Hayashi, M. Microwave spectrum and internal rotation of 2‐butyne‐1, 1, 1‐d
Ilyushin, V. et al. Almost free methyl top internal rotation: Rotational spectrum of 2-butynoic acid. J. Mol Spectrosc. 267, 186–190 (2011).
Hensel, K. D. & Gerry, M. C. L. Microwave spectrum of tetrolyl fluoride. J. Chem. Soc. Faraday Trans. 90, 3023–3027 (1994).
Facelli, J. C. et al. & . Low-temperature carbon-13 magnetic resonance in solids. 5. Chemical shielding anisotropy of the
Gil, A. M. & Alberti, E. The effect of magic angle spinning on proton spin–lattice relaxation times in some organic solids. Solid State Nucl. Magn. Reson. 11, 203–209 (1998).
pubmed: 9694388
Ticko, R. et al. & . Molecular dynamics and the phase transition in solid C
Panich, A. M. & Panich, E. A. NMR lineshape of a six-spin system with dipole-dipole interactions. Application to benzene. J. Magn. Res. Series A 116, 113–116 (1995).
Goc, R. Computer calculation of the Van Vleck second moment for materials with internal rotation of spin groups. Comput. Phys. Commun. 162, 102–112 (2004).
Kubo, R. & Tomita, K. A general theory of magnetic resonance adsorption. J. Phys. Soc. Jpn 9, 888–919 (1954).
Koksal, F. & Rossler, E. Spin–lattice relaxation by tunneling motions of methyl groups in some organic compounds. Solid State Commun. 44, 233–235 (1982).
Layanowicz, L. Spin–lattice NMR relaxation and second moment of NMR line in solids containing CH
Eibl, K., Kannengießer, R., Stahl, W., Nguyen, H. V. L. & Kleiner, I. Low barrier methyl rotation in 3-pentyn-1-ol as observed by microwave spectroscopy. Molecular Phys. 114, 3483–3489 (2016).
Coelho, A. A. Indexing of powder diffraction patterns by iterative use of singular value decomposition. J. Appl. Cryst. 36, 86–95 (2003).
Coelho, A. A. & Kern, A. Discussion of the indexing algorithms within TOPAS. CPD Newsletter 32, 43–45 (2005).
Macrae, C. F. et al. & . Mercury CSD 2.0 - new features for the vsualization and investigation of crystal structures. J. Appl. Cryst. 41, 466–470 (2008).
Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. Comparison of silver and molybdenum microfocus X-ray sources for single-crystal structure determination. J. Appl. Cryst 48, 3–10 (2015).
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. OLEX2: A complete structure solution, refinement and analysis program. J. Appl. Cryst 42, 339–341 (2009).
Sheldrick, G. M. A short history of SHELX. Acta Cryst. A64, 112–122 (2008).
Sheldrick, G. M. Crystal structure refinement with SHELXL. Acta Cryst. C71, 3–8 (2015).
Frisch, M. J. et al. Gaussian 16, Revision B.01 (Gaussian, 2016).
Zhao, Y., Mouhib, H., Li, G., Kleiner, I. & Stahl, W. Conformational analysis of tert-butyl acetate using a combination of microwave spectroscopy and quantum chemical calculations. J. Mol. Spectrosc. 322, 38–42 (2016).
Macho, V., Brombacher, L. & Spiess, H. W. The NMR-WEBLAB: An internet approach to NMR lineshape analysis. Appl. Magn. Reson. 20, 405–432 (2001).
Pecul, M., Dodziuk, H., Jaszunski, M., Lukin, O. & Leszezynski, J. Ab initio calculations of the NMR spectra of [1.1.1]propellane and bicyclo[1.1.1]pentane. Phys. Chem. Chem. Phys. 3, 1986–1991 (1985).
Kubo, R. & Tomita, K. A general theory of magnetic resonance absorption. J. Phys. Soc. Jpn 9, 888–919 (1954).

Auteurs

Jacopo Perego (J)

Department of Materials Science, University of Milano Bicocca, Milan, Italy.

Silvia Bracco (S)

Department of Materials Science, University of Milano Bicocca, Milan, Italy.

Mattia Negroni (M)

Department of Materials Science, University of Milano Bicocca, Milan, Italy.

Charl X Bezuidenhout (CX)

Department of Materials Science, University of Milano Bicocca, Milan, Italy.

Giacomo Prando (G)

Department of Physics, University of Pavia, Pavia, Italy.

Pietro Carretta (P)

Department of Physics, University of Pavia, Pavia, Italy.

Angiolina Comotti (A)

Department of Materials Science, University of Milano Bicocca, Milan, Italy. angiolina.comotti@unimib.it.

Piero Sozzani (P)

Department of Materials Science, University of Milano Bicocca, Milan, Italy. piero.sozzani@unimib.it.

Classifications MeSH