The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods.


Journal

Archives of toxicology
ISSN: 1432-0738
Titre abrégé: Arch Toxicol
Pays: Germany
ID NLM: 0417615

Informations de publication

Date de publication:
07 2020
Historique:
received: 28 01 2020
accepted: 03 06 2020
pubmed: 8 7 2020
medline: 13 7 2021
entrez: 8 7 2020
Statut: ppublish

Résumé

Hazard assessment, based on new approach methods (NAM), requires the use of batteries of assays, where individual tests may be contributed by different laboratories. A unified strategy for such collaborative testing is presented. It details all procedures required to allow test information to be usable for integrated hazard assessment, strategic project decisions and/or for regulatory purposes. The EU-ToxRisk project developed a strategy to provide regulatorily valid data, and exemplified this using a panel of > 20 assays (with > 50 individual endpoints), each exposed to 19 well-known test compounds (e.g. rotenone, colchicine, mercury, paracetamol, rifampicine, paraquat, taxol). Examples of strategy implementation are provided for all aspects required to ensure data validity: (i) documentation of test methods in a publicly accessible database; (ii) deposition of standard operating procedures (SOP) at the European Union DB-ALM repository; (iii) test readiness scoring accoding to defined criteria; (iv) disclosure of the pipeline for data processing; (v) link of uncertainty measures and metadata to the data; (vi) definition of test chemicals, their handling and their behavior in test media; (vii) specification of the test purpose and overall evaluation plans. Moreover, data generation was exemplified by providing results from 25 reporter assays. A complete evaluation of the entire test battery will be described elsewhere. A major learning from the retrospective analysis of this large testing project was the need for thorough definitions of the above strategy aspects, ideally in form of a study pre-registration, to allow adequate interpretation of the data and to ensure overall scientific/toxicological validity.

Identifiants

pubmed: 32632539
doi: 10.1007/s00204-020-02802-6
pii: 10.1007/s00204-020-02802-6
pmc: PMC7367925
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

2435-2461

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Auteurs

Alice Krebs (A)

In Vitro Toxicology and Biomedicine, Department Inaugurated by the Doerenkamp-Zbinden Foundation, University of Konstanz, Universitaetsstr. 10, 78457, Konstanz, Germany.
Konstanz Research School Chemical Biology, University of Konstanz, 78457, Konstanz, Germany.

Barbara M A van Vugt-Lussenburg (BMA)

BioDetection Systems BV, Science Park 406, 1098 XH, Amsterdam, The Netherlands.

Tanja Waldmann (T)

In Vitro Toxicology and Biomedicine, Department Inaugurated by the Doerenkamp-Zbinden Foundation, University of Konstanz, Universitaetsstr. 10, 78457, Konstanz, Germany.
trenzyme GmbH, Byk-Gulden-Str. 2, 78467, Konstanz, Germany.

Wiebke Albrecht (W)

Leibniz-Institut für Arbeitsforschung an der TU Dortmund, Leibniz Research Center for Working Environment and Human Factors (IfADo), Ardeystraße 67, 44139, Dortmund, Germany.

Jan Boei (J)

Leiden University Medical Center, P.O. Box 9600, 2300 RC, Leiden, The Netherlands.

Bas Ter Braak (B)

Division of Drug Discovery and Safety, Leiden Academic Center for Drug Research, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.

Maja Brajnik (M)

Edelweiss Connect GmbH, Technology Park Basel, Hochbergerstrasse 60C, 4057, Basel, Switzerland.

Thomas Braunbeck (T)

Aquatic Ecology and Toxicology Group, Center for Organismal Studies, University of Heidelberg, Im Neuenheimer Feld 504, 69120, Heidelberg, Germany.

Tim Brecklinghaus (T)

Leibniz-Institut für Arbeitsforschung an der TU Dortmund, Leibniz Research Center for Working Environment and Human Factors (IfADo), Ardeystraße 67, 44139, Dortmund, Germany.

Francois Busquet (F)

CAAT Europe, University of Konstanz, Steinbeis SU-1866, 78457, Konstanz, Germany.

Andras Dinnyes (A)

BioTalentum Ltd., Aulich Lajos str. 26, Gödöllő, 2100, Hungary.

Joh Dokler (J)

Edelweiss Connect GmbH, Technology Park Basel, Hochbergerstrasse 60C, 4057, Basel, Switzerland.

Xenia Dolde (X)

In Vitro Toxicology and Biomedicine, Department Inaugurated by the Doerenkamp-Zbinden Foundation, University of Konstanz, Universitaetsstr. 10, 78457, Konstanz, Germany.

Thomas E Exner (TE)

Edelweiss Connect GmbH, Technology Park Basel, Hochbergerstrasse 60C, 4057, Basel, Switzerland.

Ciarán Fisher (C)

Simcyp Division, Certara UK Limited, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK.

David Fluri (D)

InSphero AG, Wagistrasse 27, 8952, Schlieren, Switzerland.

Anna Forsby (A)

Unit of Toxicology Sciences, Swedish Toxicology Sciences Research Center (Swetox), Karolinska Institutet, Forskargatan 20, 151 36, Södertälje, Sweden.
Department of Biochemistry and Biophysics, Stockholm University, 10691, Stockholm, Sweden.

Jan G Hengstler (JG)

Leibniz-Institut für Arbeitsforschung an der TU Dortmund, Leibniz Research Center for Working Environment and Human Factors (IfADo), Ardeystraße 67, 44139, Dortmund, Germany.

Anna-Katharina Holzer (AK)

In Vitro Toxicology and Biomedicine, Department Inaugurated by the Doerenkamp-Zbinden Foundation, University of Konstanz, Universitaetsstr. 10, 78457, Konstanz, Germany.

Zofia Janstova (Z)

BioTalentum Ltd., Aulich Lajos str. 26, Gödöllő, 2100, Hungary.

Paul Jennings (P)

Division of Molecular and Computational Toxicology, Department of Chemistry and Pharmaceutical Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1108, 1081 HZ, Amsterdam, The Netherlands.

Jaffar Kisitu (J)

In Vitro Toxicology and Biomedicine, Department Inaugurated by the Doerenkamp-Zbinden Foundation, University of Konstanz, Universitaetsstr. 10, 78457, Konstanz, Germany.
Konstanz Research School Chemical Biology, University of Konstanz, 78457, Konstanz, Germany.

Julianna Kobolak (J)

BioTalentum Ltd., Aulich Lajos str. 26, Gödöllő, 2100, Hungary.

Manoj Kumar (M)

Department of Development and Regeneration, Stem Cell Biology and Embryology, Stem Cell Institute Leuven, KU Leuven, O&N IV Herestraat 49, 3000, Leuven, Belgium.

Alice Limonciel (A)

Division of Molecular and Computational Toxicology, Department of Chemistry and Pharmaceutical Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1108, 1081 HZ, Amsterdam, The Netherlands.

Jessica Lundqvist (J)

Unit of Toxicology Sciences, Swedish Toxicology Sciences Research Center (Swetox), Karolinska Institutet, Forskargatan 20, 151 36, Södertälje, Sweden.
Department of Biochemistry and Biophysics, Stockholm University, 10691, Stockholm, Sweden.

Balázs Mihalik (B)

BioTalentum Ltd., Aulich Lajos str. 26, Gödöllő, 2100, Hungary.

Wolfgang Moritz (W)

InSphero AG, Wagistrasse 27, 8952, Schlieren, Switzerland.

Giorgia Pallocca (G)

CAAT Europe, University of Konstanz, Steinbeis SU-1866, 78457, Konstanz, Germany.

Andrea Paola Cediel Ulloa (APC)

Unit of Toxicology Sciences, Swedish Toxicology Sciences Research Center (Swetox), Karolinska Institutet, Forskargatan 20, 151 36, Södertälje, Sweden.

Manuel Pastor (M)

Department of Experimental and Health Sciences, Research Programme on Biomedical Informatics (GRIB), Institut Hospital del Mar d'Investigacions Mèdiques (IMIM), Universitat Pompeu Fabra, 08003, Barcelona, Spain.

Costanza Rovida (C)

CAAT Europe, University of Konstanz, Steinbeis SU-1866, 78457, Konstanz, Germany.

Ugis Sarkans (U)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge, UK.

Johannes P Schimming (JP)

Leiden Academic Center for Drug Research, LACDR/Toxicology, Leiden University, PO Box 9500, 2300 RA, Leiden, The Netherlands.

Bela Z Schmidt (BZ)

Switch Laboratory, Department of Cellular and Molecular Medicine, VIB-KU Leuven Center for Brain and Disease Research, KU Leuven, Herestraat 49, 3000, Leuven, Belgium.

Regina Stöber (R)

Leibniz-Institut für Arbeitsforschung an der TU Dortmund, Leibniz Research Center for Working Environment and Human Factors (IfADo), Ardeystraße 67, 44139, Dortmund, Germany.

Tobias Strassfeld (T)

InSphero AG, Wagistrasse 27, 8952, Schlieren, Switzerland.

Bob van de Water (B)

Leiden Academic Center for Drug Research, LACDR/Toxicology, Leiden University, PO Box 9500, 2300 RA, Leiden, The Netherlands.

Anja Wilmes (A)

Division of Molecular and Computational Toxicology, Department of Chemistry and Pharmaceutical Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1108, 1081 HZ, Amsterdam, The Netherlands.

Bart van der Burg (B)

BioDetection Systems BV, Science Park 406, 1098 XH, Amsterdam, The Netherlands.

Catherine M Verfaillie (CM)

Department of Development and Regeneration, Stem Cell Biology and Embryology, Stem Cell Institute Leuven, KU Leuven, O&N IV Herestraat 49, 3000, Leuven, Belgium.

Rebecca von Hellfeld (R)

Aquatic Ecology and Toxicology Group, Center for Organismal Studies, University of Heidelberg, Im Neuenheimer Feld 504, 69120, Heidelberg, Germany.

Harry Vrieling (H)

Leiden University Medical Center, P.O. Box 9600, 2300 RC, Leiden, The Netherlands.

Nanette G Vrijenhoek (NG)

Leiden Academic Center for Drug Research, LACDR/Toxicology, Leiden University, PO Box 9500, 2300 RA, Leiden, The Netherlands.

Marcel Leist (M)

In Vitro Toxicology and Biomedicine, Department Inaugurated by the Doerenkamp-Zbinden Foundation, University of Konstanz, Universitaetsstr. 10, 78457, Konstanz, Germany. marcel.leist@uni-konstanz.de.
CAAT Europe, University of Konstanz, Steinbeis SU-1866, 78457, Konstanz, Germany. marcel.leist@uni-konstanz.de.

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Classifications MeSH