A Comprehensive Coexpression Network Analysis in Vibrio cholerae.

Vibrio cholerae computational biology

Journal

mSystems
ISSN: 2379-5077
Titre abrégé: mSystems
Pays: United States
ID NLM: 101680636

Informations de publication

Date de publication:
07 Jul 2020
Historique:
entrez: 9 7 2020
pubmed: 9 7 2020
medline: 9 7 2020
Statut: epublish

Résumé

Research into the evolution and pathogenesis of

Identifiants

pubmed: 32636337
pii: 5/4/e00550-20
doi: 10.1128/mSystems.00550-20
pmc: PMC7343309
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : NIAID NIH HHS
ID : R01 AI125337
Pays : United States
Organisme : NIAID NIH HHS
ID : R21 AI137546
Pays : United States

Informations de copyright

Copyright © 2020 DuPai et al.

Références

Methods Mol Biol. 2017;1645:59-72
pubmed: 28710621
Nat Genet. 2018 Jul;50(7):951-955
pubmed: 29942084
Bioinformatics. 2018 Dec 1;34(23):4118-4120
pubmed: 29931111
DNA Cell Biol. 2008 Jul;27(7):347-55
pubmed: 18462070
mBio. 2018 Jul 10;9(4):
pubmed: 29991587
BMC Genomics. 2013 Feb 19;14:112
pubmed: 23421563
Microbiome. 2018 Jan 30;6(1):20
pubmed: 29378633
Nat Rev Microbiol. 2015 May;13(5):255-68
pubmed: 25895940
Nature. 2012 Jan 04;481(7381):389-93
pubmed: 22217937
Nat Protoc. 2009;4(1):44-57
pubmed: 19131956
BMC Genomics. 2018 May 21;19(1):373
pubmed: 29783948
Genes Dev. 2011 Feb 15;25(4):397-408
pubmed: 21325136
Nat Biotechnol. 2014 Sep;32(9):915-925
pubmed: 25150835
Microbiology. 2002 Nov;148(Pt 11):3681-3693
pubmed: 12427958
Front Microbiol. 2016 Jul 26;7:1155
pubmed: 27507966
Nucleic Acids Res. 2019 Apr 8;47(6):3171-3183
pubmed: 30649554
Nucleic Acids Res. 2013 Oct;41(19):9033-48
pubmed: 23901011
Genome Biol. 2014;15(12):550
pubmed: 25516281
Nat Biotechnol. 2016 May;34(5):525-7
pubmed: 27043002
PLoS One. 2011;6(12):e28438
pubmed: 22163302
Nat Commun. 2018 Mar 15;9(1):1090
pubmed: 29545622
PLoS Negl Trop Dis. 2016 Feb 04;10(2):e0004330
pubmed: 26845681
Nucleic Acids Res. 2010 Jan;38(Database issue):D204-10
pubmed: 20015972
Science. 2017 Nov 10;358(6364):785-789
pubmed: 29123067
PLoS Pathog. 2006 Oct;2(10):e109
pubmed: 17054394
Lancet. 2018 May 12;391(10133):1908-1915
pubmed: 29502905
Brief Bioinform. 2018 Jul 20;19(4):575-592
pubmed: 28077403
Front Plant Sci. 2016 Apr 08;7:444
pubmed: 27092161
Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):E766-75
pubmed: 25646441
Sci Rep. 2016 Jun 22;6:28422
pubmed: 27328747
Cell Host Microbe. 2013 Dec 11;14(6):652-63
pubmed: 24331463
Gene. 2018 Jan 10;639:1-10
pubmed: 28987343
Proc Natl Acad Sci U S A. 2000 Aug 29;97(18):10101-6
pubmed: 10963673
F1000Res. 2015 Dec 30;4:1521
pubmed: 26925227
Proc Natl Acad Sci U S A. 2006 Jan 31;103(5):1528-33
pubmed: 16432199
Nucleic Acids Res. 2011 Jan;39(Database issue):D19-21
pubmed: 21062823
Cell Rep. 2016 May 3;15(5):951-958
pubmed: 27117415
Front Microbiol. 2018 Nov 09;9:2686
pubmed: 30473684
BMC Genomics. 2014 Aug 28;15:730
pubmed: 25164283
PLoS Genet. 2019 Oct 28;15(10):e1008362
pubmed: 31658256
Nature. 2019 Jan;565(7738):230-233
pubmed: 30602788
Nucleic Acids Res. 2016 Jul 8;44(W1):W46-53
pubmed: 27154273
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Bioinformatics. 2007 Jan 15;23(2):222-31
pubmed: 17110366
Cells. 2018 Mar 08;7(3):
pubmed: 29518040
Microarrays (Basel). 2015 May 21;4(2):270-86
pubmed: 27600225
PLoS Pathog. 2013;9(12):e1003800
pubmed: 24385900
BMC Genomics. 2019 May 9;20(1):360
pubmed: 31072300
mBio. 2014 Jan 28;5(1):e01028-13
pubmed: 24473132
Front Microbiol. 2017 Oct 16;8:2005
pubmed: 29085350
mBio. 2016 Aug 30;7(4):
pubmed: 27578758
Proc Natl Acad Sci U S A. 1998 Mar 17;95(6):3134-9
pubmed: 9501228
PLoS Pathog. 2016 Apr 12;12(4):e1005570
pubmed: 27070545
Nature. 2000 Aug 3;406(6795):477-83
pubmed: 10952301
Trends Biotechnol. 2017 Jun;35(6):498-507
pubmed: 28351613
J Bacteriol. 2007 Jul;189(14):5348-60
pubmed: 17496082
Nucleic Acids Res. 2010 Jan;38(Database issue):D492-6
pubmed: 19854944
BMC Bioinformatics. 2008 Dec 29;9:559
pubmed: 19114008
Nucleic Acids Res. 2017 Jan 4;45(D1):D543-D550
pubmed: 27899573
Nucleic Acids Res. 2017 Jan 4;45(D1):D200-D203
pubmed: 27899674
Cell Host Microbe. 2011 Aug 18;10(2):165-74
pubmed: 21843873
Mol Microbiol. 2014 Jan;91(2):326-47
pubmed: 24236404
J Clin Microbiol. 2018 Oct 25;56(11):
pubmed: 30135231
Nucleic Acids Res. 2019 Jan 8;47(D1):D330-D338
pubmed: 30395331
PLoS Genet. 2007 Sep;3(9):1724-35
pubmed: 17907809
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
PeerJ. 2018 Feb 7;6:e4303
pubmed: 29441232
Bioinformatics. 2015 Jul 1;31(13):2123-30
pubmed: 25717192
Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3091-3099
pubmed: 30718437
Nat Rev Genet. 2010 Oct;11(10):733-9
pubmed: 20838408
Mol Microbiol. 2015 Aug;97(4):630-45
pubmed: 25982817
Indian J Med Res. 2011 Feb;133:201-6
pubmed: 21415495
Cell. 2012 Apr 13;149(2):358-70
pubmed: 22500802
Oncogene. 2003 Sep 29;22(42):6497-507
pubmed: 14528274
J Bacteriol. 2017 Mar 14;199(7):
pubmed: 28115545
Science. 2017 Nov 10;358(6364):789-793
pubmed: 29123068

Auteurs

Cory D DuPai (CD)

Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas, USA.

Claus O Wilke (CO)

Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas, USA.
Department of Integrative Biology, University of Texas at Austin, Austin, Texas, USA.

Bryan W Davies (BW)

Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, Texas, USA bwdavies@austin.utexas.edu.
Department of Molecular Biosciences, University of Texas at Austin, Austin, Texas, USA.

Classifications MeSH