DNA methylation biomarkers of future health outcomes in children.

Biomarker DNA methylation Epigenetics Pediatrics Precision medicine

Journal

Molecular and cellular pediatrics
ISSN: 2194-7791
Titre abrégé: Mol Cell Pediatr
Pays: Germany
ID NLM: 101660689

Informations de publication

Date de publication:
09 Jul 2020
Historique:
received: 15 04 2020
accepted: 25 06 2020
entrez: 10 7 2020
pubmed: 10 7 2020
medline: 10 7 2020
Statut: epublish

Résumé

Biomarkers which predict future health outcomes are key to the goals of precision health. Such biomarkers do not have to be involved in the causal pathway of a disease, and their performance is best assessed using statistical tests of clinical performance and evaluation of net health impact. DNA methylation is the most commonly studied epigenetic process and represents a potential biomarker of future health outcomes. We review 25 studies in non-oncological paediatric conditions where DNA methylation biomarkers of future health outcomes are assessed. Whilst a number of positive findings have been described, the body of evidence is severely limited by issues with outcome measures, tissue-specific samples, accounting for sample cell type heterogeneity, lack of appropriate statistical testing, small effect sizes, limited validation, and no assessment of net health impact. Future studies should concentrate on careful study design to overcome these issues, and integration of DNA methylation data with other 'omic', clinical, and environmental data to generate the most clinically useful biomarkers of paediatric disease.

Identifiants

pubmed: 32642955
doi: 10.1186/s40348-020-00099-0
pii: 10.1186/s40348-020-00099-0
pmc: PMC7343681
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

7

Références

Clin Chem Lab Med. 2011 Apr;49(4):699-704
pubmed: 21480815
Epilepsy Res. 2015 Jan;109:28-33
pubmed: 25524839
Clin Exp Allergy. 2012 Nov;42(11):1575-81
pubmed: 22862293
Nurs Clin North Am. 2018 Jun;53(2):137-143
pubmed: 29779508
J Pediatr. 2017 Nov;190:180-184.e1
pubmed: 28867064
EBioMedicine. 2018 Oct;36:489-496
pubmed: 30241917
Eur Respir J Suppl. 2002 Sep;37:44s-46s
pubmed: 12361363
N Engl J Med. 2015 Feb 26;372(9):793-5
pubmed: 25635347
World J Biol Psychiatry. 2017 Jun;18(4):291-299
pubmed: 27676100
Front Genet. 2019 Nov 14;10:1150
pubmed: 31803237
Genome Res. 2011 Nov;21(11):1813-21
pubmed: 21948560
Nat Rev Clin Oncol. 2011 Mar;8(3):184-7
pubmed: 21364692
Genome Res. 2014 Jul;24(7):1064-74
pubmed: 24709820
PLoS One. 2018 Mar 7;13(3):e0193271
pubmed: 29513726
Pharmgenomics Pers Med. 2017 May 09;10:157-168
pubmed: 28533693
Circulation. 2011 Mar 15;123(10):1116-24
pubmed: 21403122
Clin Epigenetics. 2018 May 30;10:71
pubmed: 29854012
Biology (Basel). 2016 Jan 06;5(1):
pubmed: 26751487
Gastroenterology. 2019 Jun;156(8):2254-2265.e3
pubmed: 30779925
J Allergy Clin Immunol. 2015 Oct;136(4):923-31.e3
pubmed: 25910714
Science. 1975 Jan 24;187(4173):226-32
pubmed: 1111098
Nat Rev Genet. 2018 May;19(5):299-310
pubmed: 29479082
J Pain. 2019 Jul;20(7):771-785
pubmed: 30639570
Clin Exp Med. 2018 Feb;18(1):1-14
pubmed: 28752221
Nat Rev Rheumatol. 2013 May;9(5):267-76
pubmed: 23419428
Brief Bioinform. 2019 Mar 25;20(2):585-597
pubmed: 29672679
Depress Anxiety. 2015 Dec;32(12):861-70
pubmed: 26647360
Transl Psychiatry. 2014 Sep 16;4:e444
pubmed: 25226553
J Pediatr. 2014 Sep;165(3):472-8
pubmed: 24996986
Genes Brain Behav. 2018 Sep;17(7):e12476
pubmed: 29575474
Transl Psychiatry. 2017 Aug 29;7(8):e1221
pubmed: 28850114
Nat Rev Genet. 2005 Apr;6(4):287-98
pubmed: 15803198
Indian J Pediatr. 2015 Apr;82(4):340-4
pubmed: 25348460
Curr Environ Health Rep. 2015 Jun;2(2):145-54
pubmed: 26231364
N Engl J Med. 2018 Apr 05;378(14):1323-1334
pubmed: 29617578
JAMA. 1990 Mar 9;263(10):1385-9
pubmed: 2406472
Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13845-13850
pubmed: 27849614
Gastroenterology. 2018 Feb;154(3):585-598
pubmed: 29031501
PLoS One. 2017 Oct 13;12(10):e0186150
pubmed: 29028809
Mediators Inflamm. 2015;2015:564625
pubmed: 26089602
Health Aff (Millwood). 2018 May;37(5):694-701
pubmed: 29733705
Sci Rep. 2017 Dec 5;7(1):16954
pubmed: 29209073
N Engl J Med. 2015 Jun 4;372(23):2229-34
pubmed: 26014593
Nat Methods. 2013 Oct;10(10):949-55
pubmed: 24076989
Am J Respir Crit Care Med. 2018 Oct 15;198(8):1012-1020
pubmed: 29756989
Nat Genet. 2007 Apr;39(4):457-66
pubmed: 17334365
PLoS Biol. 2017 Jan 12;15(1):e2001402
pubmed: 28081144
Am J Respir Crit Care Med. 2017 Mar 15;195(6):829-831
pubmed: 28294656
Eur J Hum Genet. 2001 Jun;9(6):409-18
pubmed: 11436121
Genet Med. 2019 Sep;21(9):1998-2006
pubmed: 30828085
Nat Rev Cancer. 2017 Apr;17(4):223-238
pubmed: 28233803
Nat Commun. 2018 Nov 29;9(1):5068
pubmed: 30498206
BMJ Open. 2014 Jul 14;4(7):e005318
pubmed: 25023132
Dis Markers. 2017;2017:3726595
pubmed: 29038612
Epigenomics. 2018 Jan;10(1):91-103
pubmed: 29172706
Prog Neuropsychopharmacol Biol Psychiatry. 2017 Apr 3;75:28-34
pubmed: 28025020
Nat Commun. 2018 Aug 17;9(1):3308
pubmed: 30120223
BMC Bioinformatics. 2019 Apr 29;20(1):218
pubmed: 31035919
Cell Host Microbe. 2014 Sep 10;16(3):276-89
pubmed: 25211071

Auteurs

Shivanthan Shanthikumar (S)

Respiratory and Sleep Medicine, Royal Children's Hospital, Flemington Road, Parkville, Melbourne, Victoria, 3052, Australia. shivanthan.shanthikumar@rch.org.au.
Respiratory Diseases, Murdoch Children's Research Institute, Melbourne, Australia. shivanthan.shanthikumar@rch.org.au.
Department of Paediatrics, The University of Melbourne, Melbourne, Australia. shivanthan.shanthikumar@rch.org.au.

Melanie R Neeland (MR)

Department of Paediatrics, The University of Melbourne, Melbourne, Australia.
Epigenetics, Murdoch Children's Research Institute, Melbourne, Australia.

Jovana Maksimovic (J)

Respiratory Diseases, Murdoch Children's Research Institute, Melbourne, Australia.
Department of Paediatrics, The University of Melbourne, Melbourne, Australia.
Computational Biology, Peter MacCallum Cancer Centre, Melbourne, Australia.

Sarath C Ranganathan (SC)

Respiratory and Sleep Medicine, Royal Children's Hospital, Flemington Road, Parkville, Melbourne, Victoria, 3052, Australia.
Respiratory Diseases, Murdoch Children's Research Institute, Melbourne, Australia.
Department of Paediatrics, The University of Melbourne, Melbourne, Australia.

Richard Saffery (R)

Department of Paediatrics, The University of Melbourne, Melbourne, Australia.
Epigenetics, Murdoch Children's Research Institute, Melbourne, Australia.

Classifications MeSH