Systematic Review of Plant Ribosome Heterogeneity and Specialization.

functional heterogeneity remodeling ribosomal code specialized ribosome substoichiometry

Journal

Frontiers in plant science
ISSN: 1664-462X
Titre abrégé: Front Plant Sci
Pays: Switzerland
ID NLM: 101568200

Informations de publication

Date de publication:
2020
Historique:
received: 13 06 2019
accepted: 10 06 2020
entrez: 17 7 2020
pubmed: 17 7 2020
medline: 17 7 2020
Statut: epublish

Résumé

Plants dedicate a high amount of energy and resources to the production of ribosomes. Historically, these multi-protein ribosome complexes have been considered static protein synthesis machines that are not subject to extensive regulation but only read mRNA and produce polypeptides accordingly. New and increasing evidence across various model organisms demonstrated the heterogeneous nature of ribosomes. This heterogeneity can constitute specialized ribosomes that regulate mRNA translation and control protein synthesis. A prominent example of ribosome heterogeneity is seen in the model plant,

Identifiants

pubmed: 32670337
doi: 10.3389/fpls.2020.00948
pmc: PMC7332886
doi:

Types de publication

Systematic Review

Langues

eng

Pagination

948

Informations de copyright

Copyright © 2020 Martinez-Seidel, Beine-Golovchuk, Hsieh and Kopka.

Références

Science. 2011 Dec 16;334(6062):1524-9
pubmed: 22096102
Plant J. 2017 May;90(4):628-653
pubmed: 28244193
Nat Struct Mol Biol. 2017 Mar;24(3):214-220
pubmed: 28112732
Plant Physiol. 2019 Jul;180(3):1709-1724
pubmed: 31015299
Front Plant Sci. 2016 Aug 24;7:1284
pubmed: 27605933
Trends Genet. 2018 Nov;34(11):832-845
pubmed: 30195580
Plant J. 2004 Jan;37(1):92-103
pubmed: 14675435
Cold Spring Harb Perspect Biol. 2012 May 01;4(5):
pubmed: 22550233
Cell. 2007 Nov 2;131(3):557-71
pubmed: 17981122
Plant Physiol. 2009 Jun;150(2):889-903
pubmed: 19376835
Plant Mol Biol. 2005 Mar;57(4):577-91
pubmed: 15821981
Plant Physiol. 2018 Jan;176(1):804-818
pubmed: 29142022
Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2765-2770
pubmed: 28223530
Nat Rev Genet. 2018 Jul;19(7):431-452
pubmed: 29725087
Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):E89-98
pubmed: 25535344
Plant Physiol. 2004 Jul;135(3):1206-20
pubmed: 15266054
Symp Soc Exp Biol. 1958;12:138-63
pubmed: 13580867
EMBO J. 2011 Apr 6;30(7):1343-56
pubmed: 21343906
Plant Physiol. 2014 Feb;164(2):499-512
pubmed: 24385567
Nucleic Acids Res. 2019 Feb 28;47(4):1880-1895
pubmed: 30576513
Plant Physiol. 2018 Jan;176(1):254-269
pubmed: 29158329
Nat Struct Mol Biol. 2017 Sep;24(9):700-707
pubmed: 28759050
Plant J. 2006 Aug;47(3):417-26
pubmed: 16774645
Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2378-83
pubmed: 9482893
Cell Rep. 2018 Oct 2;25(1):236-248.e6
pubmed: 30282032
Curr Opin Cell Biol. 2017 Apr;45:92-101
pubmed: 28445788
Plant Mol Biol. 2016 May;91(1-2):161-77
pubmed: 26873698
Trends Biochem Sci. 2019 May;44(5):478-479
pubmed: 30792028
J Cell Biol. 2002 Jun 10;157(6):941-51
pubmed: 12058014
Virus Res. 2019 Jan 2;259:97-107
pubmed: 30355529
Plant Sci. 2020 Mar;292:110394
pubmed: 32005399
Biochem Cell Biol. 1995 Nov-Dec;73(11-12):933-47
pubmed: 8722009
PLoS One. 2015 Jan 27;10(1):e0117309
pubmed: 25625317
BMC Plant Biol. 2014 Nov 18;14:306
pubmed: 25403240
Plant Cell. 2016 Oct;28(10):2398-2416
pubmed: 27742800
Trends Plant Sci. 1999 Apr;4(4):142-148
pubmed: 10322548
Plant Physiol. 2018 Aug;177(4):1539-1554
pubmed: 29914890
Mol Cell Proteomics. 2019 Jul;18(7):1345-1362
pubmed: 31023727
Plant Physiol. 2001 Oct;127(2):398-415
pubmed: 11598216
Plant J. 2000 Feb;21(4):317-27
pubmed: 10758483
Front Plant Sci. 2017 Sep 15;8:1553
pubmed: 28966624
J Proteome Res. 2013 Jul 5;12(7):3449-59
pubmed: 23750852
EMBO Rep. 2006 Dec;7(12):1273-8
pubmed: 17082821
Trends Biochem Sci. 2017 Aug;42(8):640-654
pubmed: 28579196
Plant Physiol. 2013 Sep;163(1):378-91
pubmed: 23886624
Cell. 2017 Jun 1;169(6):1051-1065.e18
pubmed: 28575669
Plant J. 2011 Oct;68(1):51-63
pubmed: 21682783
Nature. 1970 Aug 8;227(5258):561-3
pubmed: 4913914
Nucleic Acids Res. 2017 Mar 17;45(5):2887-2896
pubmed: 27986857
New Phytol. 2019 Jan;221(2):850-865
pubmed: 30192000
PLoS One. 2011;6(12):e28070
pubmed: 22164228
Plant J. 1996 Feb;9(2):273-82
pubmed: 8820611
Nucleic Acids Res. 2013 Feb 1;41(3):1965-83
pubmed: 23268442
Plant J. 2011 Mar;65(5):724-36
pubmed: 21251100
Development. 2008 Apr;135(7):1315-24
pubmed: 18305008
Front Plant Sci. 2016 Jan 06;6:1192
pubmed: 26779226
Plant Mol Biol. 2010 Jul;73(4-5):533-46
pubmed: 20437080
Proteomics. 2012 Apr;12(7):1024-38
pubmed: 22522809
Biochem J. 2020 Aug 28;477(16):3019-3032
pubmed: 32744327
BMC Plant Biol. 2010 Aug 27;10:193
pubmed: 20799971
Science. 2014 Jul 25;345(6195):455-9
pubmed: 25061210
Trends Biochem Sci. 2019 Feb;44(2):95-109
pubmed: 30473427
Dev Cell. 2019 Mar 25;48(6):744-746
pubmed: 30913404
Arabidopsis Book. 2013 Jul 18;11:e0165
pubmed: 23908601
Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19748-53
pubmed: 20980660
Mol Cell Biol. 2017 Aug 11;37(17):
pubmed: 28606931
Plant Cell. 2010 Jan;22(1):143-58
pubmed: 20061553
Plant Physiol. 2004 Dec;136(4):4159-68
pubmed: 15557093
Int J Mol Sci. 2017 Dec 02;18(12):
pubmed: 29207474
PLoS Pathog. 2018 Apr 23;14(4):e1007016
pubmed: 29684060
Plant J. 2020 Jul;103(1):128-139
pubmed: 32027433
Front Plant Sci. 2017 Jun 14;8:1014
pubmed: 28659957
Genes Dev. 1997 Aug 15;11(16):2124-36
pubmed: 9284051
BMC Genomics. 2013 Nov 13;14:783
pubmed: 24225185
Mol Cell Biol. 1997 Sep;17(9):4904-13
pubmed: 9271370
Genetics. 2012 May;191(1):107-18
pubmed: 22377630
Science. 1987 Nov 13;238(4829):933-7
pubmed: 3672135
Nat Commun. 2017 Jul 31;8(1):159
pubmed: 28757607
Planta. 2008 Sep;228(4):627-40
pubmed: 18566829
Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):4946-4954
pubmed: 30804176
Nat Cell Biol. 2019 Feb;21(2):116-117
pubmed: 30664788
Plant Physiol. 2010 Aug;153(4):1878-94
pubmed: 20516338
Biosci Biotechnol Biochem. 2002 Nov;66(11):2437-43
pubmed: 12506984
J Biol Chem. 1966 Dec 25;241(24):5936-40
pubmed: 5954370
Nucleic Acids Res. 2010 Jul;38(13):4487-502
pubmed: 20338880
Nat Commun. 2015 Apr 16;6:6843
pubmed: 25880450
EMBO J. 1994 Jul 15;13(14):3378-88
pubmed: 7913892
Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19754-9
pubmed: 20974910
Mol Biosyst. 2012 Aug;8(8):2153-65
pubmed: 22660698
Science. 2009 Apr 10;324(5924):218-23
pubmed: 19213877
Development. 2008 Apr;135(7):1325-34
pubmed: 18305007
EMBO J. 2013 Apr 17;32(8):1087-102
pubmed: 23524850
Plant Physiol. 2005 Mar;137(3):848-62
pubmed: 15734919
Plant Physiol. 2014 May 28;165(3):1133-1143
pubmed: 24872379
Plant J. 2004 Jun;38(5):823-39
pubmed: 15144383
Plant Physiol. 2019 Jan;179(1):107-123
pubmed: 30377236
BMC Plant Biol. 2008 Oct 23;8:108
pubmed: 18947417
Wiley Interdiscip Rev RNA. 2020 Nov;11(6):e1597
pubmed: 32367681
Bioinformatics. 2014 Oct;30(19):2811-2
pubmed: 24930139
Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):106-122
pubmed: 27487458
Nat Commun. 2019 Feb 27;10(1):958
pubmed: 30814529
EMBO J. 1999 Jan 15;18(2):490-9
pubmed: 9889204
Front Chem. 2017 Nov 14;5:97
pubmed: 29184886
Plant Cell Physiol. 2012 Aug;53(8):1481-91
pubmed: 22722767
Mol Syst Biol. 2012 Jan 17;8:566
pubmed: 22252389
Biochem Biophys Res Commun. 2017 Dec 16;494(3-4):499-503
pubmed: 29066352
Nat Rev Mol Cell Biol. 2013 Dec;14(12):787-802
pubmed: 24263360
Plant Cell Physiol. 2011 Feb;52(2):436-47
pubmed: 21252299
Cell Rep. 2020 Jan 7;30(1):229-242.e5
pubmed: 31914389
BMC Biol. 2013 Dec 30;11:123
pubmed: 24377433
Plant Cell Physiol. 2007 May;48(5):745-52
pubmed: 17412735
Methods Mol Biol. 2015;1284:139-73
pubmed: 25757771
Bioinformatics. 2016 Sep 15;32(18):2847-9
pubmed: 27207943
Nature. 2017 Nov 23;551(7681):472-477
pubmed: 29143818
Nat Rev Genet. 2012 Mar 13;13(4):227-32
pubmed: 22411467
Physiol Plant. 2010 Jan;138(1):91-101
pubmed: 19878482
Biochem Soc Trans. 2018 Dec 17;46(6):1529-1539
pubmed: 30420413
Mol Cell Biol. 2001 Mar;21(5):1453-62
pubmed: 11238882
Plant Cell. 2017 Feb;29(2):207-228
pubmed: 28138016
Plant Cell. 2005 Nov;17(11):2940-53
pubmed: 16227452
Nucleic Acids Res. 2012 Sep 1;40(17):8646-61
pubmed: 22735702
Plant Physiol. 2013 Dec;163(4):1623-39
pubmed: 24038679
Plant J. 2010 Feb 1;61(3):383-98
pubmed: 19891704
J Exp Bot. 2016 May;67(11):3457-69
pubmed: 27241493
Biochim Biophys Acta. 2016 Jul;1861(7):639-49
pubmed: 27102613
Med Res Rev. 2015 Mar;35(2):225-85
pubmed: 25164622
Cell Syst. 2017 Sep 27;5(3):212-220.e6
pubmed: 28957655
Plant Biol (Stuttg). 2020 Jan;22 Suppl 1:143-152
pubmed: 30597713
Sci Rep. 2014 Feb 18;4:4122
pubmed: 24535089
PLoS One. 2015 Feb 23;10(2):e0117699
pubmed: 25706651
Front Plant Sci. 2012 Apr 05;3:66
pubmed: 22645595
PLoS One. 2011;6(12):e29307
pubmed: 22195043
Cell. 2016 Jan 14;164(1-2):91-102
pubmed: 26709046
Front Plant Sci. 2016 Nov 07;7:1611
pubmed: 27877176
Development. 2001 Nov;128(21):4289-99
pubmed: 11684664
J Biol Chem. 1992 May 15;267(14):10096-100
pubmed: 1577779
Plant J. 2011 Jan;65(2):269-81
pubmed: 21223391
J Biol Chem. 2010 Jan 8;285(2):961-8
pubmed: 19901025
Plant J. 2004 Jul;39(1):29-44
pubmed: 15200640
Biochim Biophys Acta. 2015 Sep;1847(9):809-20
pubmed: 25988717
Sci Rep. 2016 Aug 09;6:31195
pubmed: 27502163
Plant Cell. 2018 Jul;30(7):1424-1444
pubmed: 29764987
Methods Mol Biol. 2018;1676:165-183
pubmed: 28986910
Int J Biochem. 1983;15(10):1255-60
pubmed: 6628827
Mol Microbiol. 2015 Oct;98(2):384-402
pubmed: 26173379
Front Plant Sci. 2015 Dec 08;6:1090
pubmed: 26697044
Curr Opin Struct Biol. 2014 Feb;24:165-9
pubmed: 24524803
J Biol Chem. 2014 Feb 14;289(7):3901-12
pubmed: 24302738
Plant Mol Biol. 2014 Feb;84(3):301-14
pubmed: 24132771
Trends Plant Sci. 2009 Sep;14(9):512-9
pubmed: 19716746
Nature. 1961 May 13;190:576-581
pubmed: 20446365
Biochem Cell Biol. 1990 Nov;68(11):1281-7
pubmed: 2275804
J Exp Bot. 2016 Apr;67(9):2731-44
pubmed: 27006483
Plant J. 1997 Jul;12(1):31-7
pubmed: 9263450
Nat Plants. 2019 Jan;5(1):106-117
pubmed: 30626926
Mol Biol Cell. 2019 Aug 1;30(17):2240-2253
pubmed: 31188709
Front Plant Sci. 2013 Mar 01;4:32
pubmed: 23459595
Elife. 2016 Apr 27;5:
pubmed: 27117520
Plant J. 2015 Dec;84(6):1206-18
pubmed: 26568274
Mol Cell Proteomics. 2008 Feb;7(2):347-69
pubmed: 17934214
BMC Plant Biol. 2012 Sep 10;12:160
pubmed: 22963533
Arabidopsis Book. 2015 Apr 24;13:e0176
pubmed: 26019692
RNA. 2015 Mar;21(3):415-25
pubmed: 25605960
J Cell Biol. 2018 Jan 2;217(1):117-126
pubmed: 29118025
Trends Plant Sci. 2015 Nov;20(11):729-740
pubmed: 26459664
Elife. 2019 May 24;8:
pubmed: 31124783
Ann Bot. 2005 Sep;96(4):647-60
pubmed: 16081496
Nucleic Acids Res. 2017 Aug 21;45(14):8581-8595
pubmed: 28582576
Plant J. 2008 Dec;56(6):881-90
pubmed: 18694459
Plant Physiol. 2017 Jun;174(2):1216-1225
pubmed: 28381501
Plant J. 2012 Dec;72(6):922-34
pubmed: 22900828
Plant J. 2012 Jan;69(2):302-16
pubmed: 21923745
Nucleic Acids Res. 2018 Apr 6;46(6):3019-3033
pubmed: 29518237
Bioinform Biol Insights. 2015 Feb 04;9:1-17
pubmed: 25698879
Front Plant Sci. 2015 Dec 16;6:1102
pubmed: 26734020
Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):E7126-E7135
pubmed: 27791167
Nat Plants. 2015 Mar 03;1:15017
pubmed: 27246884
G3 (Bethesda). 2013 Oct 03;3(10):1769-77
pubmed: 23979931
Mol Cell. 2002 Jul;10(1):105-15
pubmed: 12150911
Plant J. 2008 Dec;56(5):743-55
pubmed: 18665916
Nat Microbiol. 2019 Mar;4(3):515-526
pubmed: 30718849
Plant Physiol. 2018 Mar;176(3):2251-2276
pubmed: 29382692
Plant Physiol. 2006 Jun;141(2):663-73
pubmed: 16632591
Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18843-8
pubmed: 19843695
Plant Sci. 2014 Jan;214:1-12
pubmed: 24268158
Plant Physiol. 2020 Jan;182(1):110-122
pubmed: 31451550
Cell Rep. 2015 Nov 3;13(5):865-73
pubmed: 26565899
Plant Sci. 2012 Aug;191-192:24-34
pubmed: 22682562
Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14584-9
pubmed: 12384572
Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19537-44
pubmed: 23144218
J Biol Chem. 2016 Jan 15;291(3):1501-13
pubmed: 26578519
Plant Cell. 2019 Sep;31(9):1945-1967
pubmed: 31239391
PLoS One. 2009 Jun 16;4(6):e5932
pubmed: 19529764
Plant Biol (Stuttg). 2015 May;17(3):599-607
pubmed: 25280352
Plant J. 2000 May;22(3):257-64
pubmed: 10849343
Cells. 2019 Oct 05;8(10):
pubmed: 31590378
Plant J. 2009 Aug;59(3):499-508
pubmed: 19392710
Nat Rev Mol Cell Biol. 2012 May 23;13(6):355-69
pubmed: 22617470
Science. 2010 Nov 26;330(6008):1203-9
pubmed: 21109664
Mol Cell Biol. 2004 Aug;24(16):7284-97
pubmed: 15282326
Plant Cell. 2009 Aug;21(8):2203-19
pubmed: 19706795
RNA. 2019 May;25(5):521-538
pubmed: 30733326
Nat Plants. 2018 Apr;4(4):212-217
pubmed: 29610536
Cell. 1982 Sep;30(2):427-37
pubmed: 7139709
Mol Cell. 2017 Jul 6;67(1):71-83.e7
pubmed: 28625553
J Am Chem Soc. 2014 Feb 5;136(5):2058-69
pubmed: 24422502
Plant Cell Physiol. 2010 Mar;51(3):448-62
pubmed: 20089509
Biochem Soc Trans. 2018 Aug 20;46(4):855-869
pubmed: 29986937
Sci Rep. 2021 Jan 28;11(1):2410
pubmed: 33510206
Curr Opin Biotechnol. 2018 Feb;49:29-34
pubmed: 28800418
Mol Cell Proteomics. 2012 Mar;11(3):M111.011429
pubmed: 21937730
Plant Physiol. 2008 May;147(1):128-42
pubmed: 18322146
J Proteomics. 2015 Oct 14;128:436-49
pubmed: 26232565
Genetics. 2013 Nov;195(3):643-81
pubmed: 24190922
FEBS Lett. 2017 May;591(9):1266-1277
pubmed: 28369795
Plant J. 1995 Jul;8(1):65-76
pubmed: 7655508
Rice (N Y). 2018 Jul 11;11(1):39
pubmed: 29995230
Proc Natl Acad Sci U S A. 2016 Nov 22;113(47):13426-13431
pubmed: 27821753
Science. 2009 Dec 4;326(5958):1412-5
pubmed: 19933110
EMBO J. 2017 Feb 15;36(4):475-486
pubmed: 28007896
Nature. 2017 Jun 29;546(7660):651-655
pubmed: 28636603
F1000Prime Rep. 2014 Jun 02;6:40
pubmed: 24991417
Cold Spring Harb Perspect Biol. 2019 May 1;11(5):
pubmed: 30037969

Auteurs

Federico Martinez-Seidel (F)

Willmitzer Department, Max Planck-Institute of Molecular Plant Physiology, Potsdam, Germany.
School of BioSciences, University of Melbourne, Parkville, VIC, Australia.

Olga Beine-Golovchuk (O)

Biochemie-Zentrum, Universitaet Heidelberg (BZH), Heidelberg, Germany.

Yin-Chen Hsieh (YC)

Bioinformatics Subdivision, Wageningen University, Wageningen, Netherlands.

Joachim Kopka (J)

Willmitzer Department, Max Planck-Institute of Molecular Plant Physiology, Potsdam, Germany.

Classifications MeSH