Transcriptome analysis of the zebrafish

Ath5 human retina inherited eye diseases retinal ganglion cells transcriptome analysis

Journal

FASEB bioAdvances
ISSN: 2573-9832
Titre abrégé: FASEB Bioadv
Pays: United States
ID NLM: 101733210

Informations de publication

Date de publication:
Jul 2020
Historique:
received: 02 04 2020
revised: 02 04 2020
accepted: 28 04 2020
entrez: 18 7 2020
pubmed: 18 7 2020
medline: 18 7 2020
Statut: epublish

Résumé

Expression of the bHLH transcription protein Atoh7 is a crucial factor conferring competence to retinal progenitor cells for the development of retinal ganglion cells. Several studies have emerged establishing

Identifiants

pubmed: 32676583
doi: 10.1096/fba.2020-00030
pii: FBA21146
pmc: PMC7354691
doi:

Types de publication

Journal Article

Langues

eng

Pagination

434-448

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom

Informations de copyright

© 2020 The Authors.

Références

Dis Model Mech. 2017 Oct 1;10(10):1253-1260
pubmed: 28993312
Dev Biol. 2020 Jan 15;457(2):226-234
pubmed: 30825427
EMBO J. 2015 Jun 3;34(11):1572-88
pubmed: 25908840
Dev Biol. 2009 Apr 1;328(1):24-39
pubmed: 19210961
Curr Biol. 2010 Feb 23;20(4):R135-6
pubmed: 20178751
Curr Opin Ophthalmol. 2011 Sep;22(5):347-55
pubmed: 21730848
Clin Genet. 2014 Oct;86(4):326-34
pubmed: 24033328
Nat Protoc. 2009;4(8):1184-91
pubmed: 19617889
FASEB J. 2020 Jan;34(1):1288-1303
pubmed: 31914666
Prog Mol Biol Transl Sci. 2013;116:193-214
pubmed: 23481196
J Biomed Biotechnol. 2011;2011:567305
pubmed: 22007144
PLoS One. 2017 Jan 20;12(1):e0170356
pubmed: 28107513
Am J Ophthalmol. 2015 Mar;159(3):437-44.e2
pubmed: 25461262
Biostatistics. 2007 Jan;8(1):118-27
pubmed: 16632515
Development. 2005 Aug;132(15):3371-9
pubmed: 15975939
Trends Neurosci. 2014 May;37(5):264-78
pubmed: 24726051
Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Sep;74(3 Pt 2):036104
pubmed: 17025705
Elife. 2019 Jan 23;8:
pubmed: 30672734
Clin Genet. 2008 Oct;74(4):392-5
pubmed: 18783408
Neurochem Int. 2011 Jul;58(8):888-95
pubmed: 21338645
Am J Ophthalmol. 2018 Sep;193:197-229
pubmed: 29559410
Development. 2001 Jul;128(13):2497-508
pubmed: 11493566
Aging (Albany NY). 2018 Aug 09;10(8):1884-1901
pubmed: 30103211
Zebrafish. 2012 Sep;9(3):120-5
pubmed: 22788540
Mol Cell Neurosci. 2018 Mar;87:55-64
pubmed: 29249292
Eye (Lond). 2017 Jan;31(1):68-86
pubmed: 27612182
EMBO Rep. 2003 Sep;4(9):894-9
pubmed: 12947416
Am J Hum Genet. 2015 Apr 2;96(4):666-74
pubmed: 25817018
J Comp Neurol. 2016 May 1;524(7):1472-93
pubmed: 26509469
Semin Cell Dev Biol. 2010 Dec;21(9):881-91
pubmed: 20732437
Nat Rev Drug Discov. 2005 Jan;4(1):35-44
pubmed: 15688071
Mamm Genome. 2002 Feb;13(2):95-101
pubmed: 11889557
J Am Soc Nephrol. 2018 Aug;29(8):2110-2122
pubmed: 30002222
Mol Vis. 2012;18:1449-56
pubmed: 22736936
Front Cell Dev Biol. 2016 Nov 30;4:138
pubmed: 27965955
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W316-22
pubmed: 21715386
Cell. 2008 Sep 19;134(6):1055-65
pubmed: 18805097
Dev Neurobiol. 2012 Mar;72(3):302-27
pubmed: 21595048
Nat Neurosci. 2011 May;14(5):578-86
pubmed: 21441919
PLoS Genet. 2007 Sep;3(9):1661-71
pubmed: 17892326
Proc Natl Acad Sci U S A. 1997 Apr 1;94(7):3088-93
pubmed: 9096350
PLoS One. 2019 Mar 12;14(3):e0211399
pubmed: 30861003
Nucleic Acids Res. 2015 Apr 20;43(7):e47
pubmed: 25605792
J Am Soc Nephrol. 2014 Sep;25(9):1991-2002
pubmed: 24676636
Annu Rev Cell Dev Biol. 2009;25:45-69
pubmed: 19575661
Development. 2005 Apr;132(7):1539-53
pubmed: 15728672
Ophthalmic Res. 2004 Jan-Feb;36(1):4-24
pubmed: 15007235
Curr Pathobiol Rep. 2017 Dec;5(4):323-331
pubmed: 29354328
Exp Eye Res. 2011 Dec;93(6):796-7
pubmed: 22019371
IUBMB Life. 2005 Jun;57(6):381-8
pubmed: 16012046
Nat Neurosci. 2007 Aug;10(8):963-9
pubmed: 17618280
Am J Hum Genet. 2012 Jul 13;91(1):15-26
pubmed: 22683087
PLoS One. 2015 Mar 23;10(3):e0119703
pubmed: 25798827
J Cell Sci. 2014 Feb 1;127(Pt 3):485-95
pubmed: 24481493
Nat Methods. 2012 Jun 28;9(7):676-82
pubmed: 22743772
Neuron. 2001 Jun;30(3):725-36
pubmed: 11430806
Development. 2015 Mar 1;142(5):832-9
pubmed: 25655700
Prog Retin Eye Res. 2008 Jan;27(1):89-110
pubmed: 17962065
FASEB J. 2019 Aug;33(8):8745-8758
pubmed: 31002540
Int J Mol Sci. 2015 Dec 04;16(12):28886-911
pubmed: 26690118
Int J Mol Sci. 2018 Dec 03;19(12):
pubmed: 30513885
Clin Genet. 2013 Aug;84(2):198-9
pubmed: 23167593
Cytotechnology. 2016 Mar;68(2):267-77
pubmed: 25108422
Int J Mol Sci. 2020 Feb 26;21(5):
pubmed: 32111086
J Neurosci. 2013 Jan 30;33(5):2177-87
pubmed: 23365253
Dev Growth Differ. 2014 Jun;56(5):387-401
pubmed: 24720470
Br J Ophthalmol. 1990 May;74(5):300-4
pubmed: 2191713
Development. 2014 Jul;141(13):2644-56
pubmed: 24924194
Eye (Lond). 2004 Nov;18(11):1038-48
pubmed: 15534588
Neuron. 2000 Aug;27(2):251-63
pubmed: 10985346
Dev Dyn. 1995 Jul;203(3):253-310
pubmed: 8589427
Mol Cell Neurosci. 2008 Jan;37(1):85-95
pubmed: 17931883
Development. 2001 Oct;128(20):4035-44
pubmed: 11641226
Genes Dev. 2001 Jan 1;15(1):24-9
pubmed: 11156601
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Nucleic Acids Res. 2013 Jan;41(Database issue):D48-55
pubmed: 23203987
PLoS One. 2019 Jun 18;14(6):e0217111
pubmed: 31211778
Development. 2016 Jun 1;143(11):1937-47
pubmed: 27246713
PLoS One. 2013;8(1):e52915
pubmed: 23326364
Genome Biol. 2009;10(9):R92
pubmed: 19735568
Dev Biol. 1999 Mar 15;207(2):309-21
pubmed: 10068465
J Neurosci. 2012 Oct 3;32(40):13929-44
pubmed: 23035102
PLoS One. 2010 Sep 07;5(9):e12542
pubmed: 20830285
Elife. 2016 Aug 09;5:
pubmed: 27504968
Nucleic Acids Res. 2019 Jan 8;47(D1):D607-D613
pubmed: 30476243
Ophthalmic Genet. 2014 Sep;35(3):190-2
pubmed: 24689660
Dev Dyn. 2017 Nov;246(11):915-924
pubmed: 28422363
Invest Ophthalmol Vis Sci. 2011 Jun 16;52(7):4294-9
pubmed: 21474777
Heredity (Edinb). 2010 Jul;105(1):135-51
pubmed: 20179734
Hum Mol Genet. 2012 Feb 15;21(4):776-83
pubmed: 22068589
Life Sci. 2019 Jul 15;229:149-156
pubmed: 31100326
Stem Cells. 2017 Nov;35(11):2239-2252
pubmed: 28792678
Nat Genet. 2018 Jun;50(6):778-782
pubmed: 29785010
Lancet. 2015 Apr 4;385(9975):1305-14
pubmed: 25529582
Gene. 2014 Jul 15;545(1):23-9
pubmed: 24809965
Hum Genet. 2019 Sep;138(8-9):993-1000
pubmed: 31422478
Nature. 1997 Jun 5;387(6633):603-7
pubmed: 9177348
Adv Exp Med Biol. 2012;723:663-8
pubmed: 22183391
Cell Rep. 2018 Nov 27;25(9):2510-2523.e4
pubmed: 30485816
Dev Neurobiol. 2014 Nov;74(11):1123-40
pubmed: 24799426
Front Cell Dev Biol. 2018 Dec 06;6:167
pubmed: 30574494
J Biol Chem. 2007 Nov 30;282(48):35187-201
pubmed: 17855369
BMC Bioinformatics. 2008 Dec 29;9:559
pubmed: 19114008
EMBO Rep. 2013 May;14(5):422-33
pubmed: 23598517
Ophthalmic Genet. 2014 Mar;35(1):1-6
pubmed: 23802135
Methods Mol Biol. 2019;1834:209-219
pubmed: 30324447
Invest Ophthalmol Vis Sci. 2015 Apr;56(4):2595-600
pubmed: 25711633
Ophthalmic Genet. 2016 Dec;37(4):462-464
pubmed: 26933893
Br J Ophthalmol. 2014 Apr;98(4):562-6
pubmed: 24457358
Nat Commun. 2019 Apr 3;10(1):1523
pubmed: 30944313
Dev Neurosci. 2006;28(1-2):128-41
pubmed: 16508310
Mech Dev. 2009 May-Jun;126(5-6):464-77
pubmed: 19445054
Genetics. 2005 May;170(1):245-61
pubmed: 15716491
Hum Mol Genet. 2004 Feb 1;13(3):315-22
pubmed: 14662654
Clin Exp Ophthalmol. 2009 Dec;37(9):884-90
pubmed: 20092598
Neural Dev. 2012 Aug 24;7:30
pubmed: 22920725
Hum Mol Genet. 2011 May 1;20(9):1864-72
pubmed: 21307088
Cell Rep. 2016 Sep 27;17(1):165-178
pubmed: 27681429
Clin Genet. 2015 Feb;87(2):192-5
pubmed: 24702266
Development. 2002 May;129(10):2435-46
pubmed: 11973275
Curr Biol. 2015 May 4;25(9):1135-45
pubmed: 25843030
Dev Biol. 2011 Jul 15;355(2):286-301
pubmed: 21565180
Neuron. 1997 Nov;19(5):981-94
pubmed: 9390513
Prog Retin Eye Res. 2016 May;52:22-46
pubmed: 27017896
Curr Biol. 2015 May 18;25(10):R423-5
pubmed: 25989084
Oncol Rep. 2019 Dec;42(6):2255-2266
pubmed: 31578580
PLoS One. 2011 Feb 15;6(2):e17080
pubmed: 21390203
Development. 2005 Jun;132(12):2759-70
pubmed: 15901663
Cell Rep. 2013 Mar 28;3(3):796-807
pubmed: 23434507
Proc Natl Acad Sci U S A. 2018 Dec 18;115(51):13099-13104
pubmed: 30498030
Birth Defects Res C Embryo Today. 2015 Jun;105(2):96-113
pubmed: 26046913
Hum Mol Genet. 2020 Jan 1;29(1):132-148
pubmed: 31696227
Curr Biol. 2005 Mar 29;15(6):489-500
pubmed: 15797017
J Clin Invest. 2012 Jul;122(7):2337-43
pubmed: 22751109
Hum Mol Genet. 2012 Aug 15;21(16):3681-94
pubmed: 22645276
Proc Natl Acad Sci U S A. 2015 Mar 31;112(13):E1559-68
pubmed: 25775587
Cell. 2017 Jun 1;169(6):985-999
pubmed: 28575679
Dev Dyn. 2018 Apr;247(4):630-641
pubmed: 29139167

Auteurs

Giuseppina Covello (G)

Department of Cellular, Computational and Integrative Biology - CIBIO University of Trento Trento Italy.
Present address: Department of Biology University of Padova Padova Italy.

Fernando J Rossello (FJ)

Australian Regenerative Medicine Institute Monash University Clayton VIC Clayton Australia.
Present address: University of Melbourne Centre for Cancer Research University of Melbourne Melbourne Victoria Australia.

Michele Filosi (M)

Department of Cellular, Computational and Integrative Biology - CIBIO University of Trento Trento Italy.

Felipe Gajardo (F)

Center for Genome Regulation Facultad de Ciencias, Santiago Universidad de Chile Santiago Chile.

Anne-Laure Duchemin (AL)

Centre for Organismal Study Heidelberg University Heidelberg Germany.

Beatrice F Tremonti (BF)

Department of Cellular, Computational and Integrative Biology - CIBIO University of Trento Trento Italy.

Michael Eichenlaub (M)

Australian Regenerative Medicine Institute Monash University Clayton VIC Clayton Australia.

Jose M Polo (JM)

Australian Regenerative Medicine Institute Monash University Clayton VIC Clayton Australia.
BDI Monash University Clayton VIC Clayton Australia.

David Powell (D)

Monash Bioinformatics Platform Monash University Clayton VIC Clayton Australia.

John Ngai (J)

Department of Molecular and Cell Biology & Helen Wills Neuroscience Institute University of California Berkeley CA USA.

Miguel L Allende (ML)

Center for Genome Regulation Facultad de Ciencias, Santiago Universidad de Chile Santiago Chile.

Enrico Domenici (E)

Department of Cellular, Computational and Integrative Biology - CIBIO University of Trento Trento Italy.
Fondazione The Microsoft Research - University of Trento Centre for Computational and Systems Biology Trento Italy.

Mirana Ramialison (M)

Australian Regenerative Medicine Institute Monash University Clayton VIC Clayton Australia.

Lucia Poggi (L)

Department of Cellular, Computational and Integrative Biology - CIBIO University of Trento Trento Italy.
Centre for Organismal Study Heidelberg University Heidelberg Germany.
Department of Physiology Development and Neuroscience University of Cambridge Cambridge United Kingdom.

Classifications MeSH