treeheatr: an R package for interpretable decision tree visualizations.
Journal
Bioinformatics (Oxford, England)
ISSN: 1367-4811
Titre abrégé: Bioinformatics
Pays: England
ID NLM: 9808944
Informations de publication
Date de publication:
19 04 2021
19 04 2021
Historique:
received:
03
05
2020
revised:
09
07
2020
accepted:
17
07
2020
pubmed:
24
7
2020
medline:
29
4
2021
entrez:
24
7
2020
Statut:
ppublish
Résumé
treeheatr is an R package for creating interpretable decision tree visualizations with the data represented as a heatmap at the tree's leaf nodes. The integrated presentation of the tree structure along with an overview of the data efficiently illustrates how the tree nodes split up the feature space and how well the tree model performs. This visualization can also be examined in depth to uncover the correlation structure in the data and importance of each feature in predicting the outcome. Implemented in an easily installed package with a detailed vignette, treeheatr can be a useful teaching tool to enhance students' understanding of a simple decision tree model before diving into more complex tree-based machine learning methods. The treeheatr package is freely available under the permissive MIT license at https://trang1618.github.io/treeheatr and https://cran.r-project.org/package=treeheatr. It comes with a detailed vignette that is automatically built with GitHub Actions continuous integration.
Identifiants
pubmed: 32702108
pii: 5875600
doi: 10.1093/bioinformatics/btaa662
pmc: PMC8055220
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
282-284Informations de copyright
© The Author(s) 2020. Published by Oxford University Press.
Références
Bioinformatics. 2018 May 1;34(9):1600-1602
pubmed: 29069305