treeheatr: an R package for interpretable decision tree visualizations.


Journal

Bioinformatics (Oxford, England)
ISSN: 1367-4811
Titre abrégé: Bioinformatics
Pays: England
ID NLM: 9808944

Informations de publication

Date de publication:
19 04 2021
Historique:
received: 03 05 2020
revised: 09 07 2020
accepted: 17 07 2020
pubmed: 24 7 2020
medline: 29 4 2021
entrez: 24 7 2020
Statut: ppublish

Résumé

treeheatr is an R package for creating interpretable decision tree visualizations with the data represented as a heatmap at the tree's leaf nodes. The integrated presentation of the tree structure along with an overview of the data efficiently illustrates how the tree nodes split up the feature space and how well the tree model performs. This visualization can also be examined in depth to uncover the correlation structure in the data and importance of each feature in predicting the outcome. Implemented in an easily installed package with a detailed vignette, treeheatr can be a useful teaching tool to enhance students' understanding of a simple decision tree model before diving into more complex tree-based machine learning methods. The treeheatr package is freely available under the permissive MIT license at https://trang1618.github.io/treeheatr and https://cran.r-project.org/package=treeheatr. It comes with a detailed vignette that is automatically built with GitHub Actions continuous integration.

Identifiants

pubmed: 32702108
pii: 5875600
doi: 10.1093/bioinformatics/btaa662
pmc: PMC8055220
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

282-284

Informations de copyright

© The Author(s) 2020. Published by Oxford University Press.

Références

Bioinformatics. 2018 May 1;34(9):1600-1602
pubmed: 29069305

Auteurs

Trang T Le (TT)

Department of Biostatistics, Epidemiology and Informatics, Institute for Biomedical Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA.

Jason H Moore (JH)

Department of Biostatistics, Epidemiology and Informatics, Institute for Biomedical Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA.

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