Endogenous Retroviruses Walk a Fine Line between Priming and Silencing.

RNA interference (RNAi) early transposon (ETn) endogenous retrovirus (ERV) human immunodeficiency virus (HIV) intracisternal A-particle (IAP) small RNA silencing tRNA primer binding site (PBS) tRNA-fragment (tRF)

Journal

Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722

Informations de publication

Date de publication:
23 07 2020
Historique:
received: 26 05 2020
revised: 17 07 2020
accepted: 20 07 2020
entrez: 29 7 2020
pubmed: 29 7 2020
medline: 27 2 2021
Statut: epublish

Résumé

Endogenous retroviruses (ERVs) in mammals are closely related to infectious retroviruses and utilize host tRNAs as a primer for reverse transcription and replication, a hallmark of long terminal repeat (LTR) retroelements. Their dependency on tRNA makes these elements vulnerable to targeting by small RNAs derived from the 3'-end of mature tRNAs (3'-tRFs), which are highly expressed during epigenetic reprogramming and potentially protect many tissues in eukaryotes. Here, we review some key functions of ERV reprogramming during mouse and human development and discuss how small RNA-mediated silencing maintains genome stability when ERVs are temporarily released from heterochromatin repression. In particular, we take a closer look at the tRNA primer binding sites (PBS) of two highly active ERV families in mice and their sequence variation that is shaped by the conflict of successful tRNA priming for replication versus evasion of silencing by 3'-tRFs.

Identifiants

pubmed: 32718022
pii: v12080792
doi: 10.3390/v12080792
pmc: PMC7472051
pii:
doi:

Substances chimiques

Retroelements 0
RNA, Transfer 9014-25-9

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Références

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11461-6
pubmed: 25049410
Nucleic Acids Res. 1993 May 25;21(10):2399-407
pubmed: 8506135
Mob DNA. 2018 Dec 18;9:36
pubmed: 30568734
Nat Commun. 2015 Nov 25;6:8864
pubmed: 26602609
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
Cell. 1995 Jun 30;81(7):983-6
pubmed: 7600584
Nucleic Acids Res. 2009 Oct;37(19):6575-86
pubmed: 19729508
Viruses. 2016 Aug 19;8(8):
pubmed: 27548206
Front Microbiol. 2012 Jul 27;3:262
pubmed: 22866050
Dev Cell. 2007 Apr;12(4):503-14
pubmed: 17395546
Annu Rev Genet. 2011;45:447-69
pubmed: 21942366
EMBO J. 1997 Nov 3;16(21):6603-12
pubmed: 9351840
Nat Rev Genet. 2013 Feb;14(2):100-12
pubmed: 23329111
J Virol. 2018 Sep 26;92(20):
pubmed: 30068653
PLoS Genet. 2017 Mar 16;13(3):e1006635
pubmed: 28301478
Proc Natl Acad Sci U S A. 1988 Apr;85(7):2219-23
pubmed: 2832848
Nat Rev Genet. 2004 May;5(5):396-400
pubmed: 15143321
Proc Natl Acad Sci U S A. 2019 Jun 4;116(23):11111-11112
pubmed: 31110013
Trends Genet. 1999 Aug;15(8):326-32
pubmed: 10431195
BMC Biol. 2014 Oct 01;12:78
pubmed: 25270025
Nat Biotechnol. 2013 May;31(5):458-64
pubmed: 23604283
J Biol Chem. 2019 Apr 5;294(14):5352-5364
pubmed: 30700559
Nature. 1984 Nov 8-14;312(5990):171-2
pubmed: 6209580
Genes Dev. 2010 Dec 15;24(24):2742-7
pubmed: 21106669
Cell Stem Cell. 2011 Jun 3;8(6):676-87
pubmed: 21624812
Nat Struct Mol Biol. 2006 Sep;13(9):763-71
pubmed: 16936727
Mol Cell. 2016 Jul 7;63(1):110-24
pubmed: 27345152
Nature. 2012 Jul 5;487(7405):57-63
pubmed: 22722858
Cell Rep. 2017 Aug 8;20(6):1463-1475
pubmed: 28793268
Cytogenet Genome Res. 2005;110(1-4):462-7
pubmed: 16093699
Mol Cell. 2008 Sep 26;31(6):785-99
pubmed: 18922463
Dev Cell. 2016 Mar 21;36(6):611-23
pubmed: 27003935
Nat Genet. 2004 May;36(5):534-9
pubmed: 15107856
Cell Stem Cell. 2017 Nov 2;21(5):694-703.e7
pubmed: 29100015
Trends Genet. 2005 Jun;21(6):322-6
pubmed: 15922829
PLoS Genet. 2019 Jul 22;15(7):e1008273
pubmed: 31329584
Cell. 2017 Jun 29;170(1):61-71.e11
pubmed: 28666125
Dev Biol. 2004 May 1;269(1):276-85
pubmed: 15081373
Elife. 2016 Jan 27;5:
pubmed: 26814573
Proc Natl Acad Sci U S A. 2019 Oct 8;116(41):20612-20622
pubmed: 31548405
Nature. 2018 May;557(7703):118-122
pubmed: 29695867
Gene. 2007 Apr 1;390(1-2):130-5
pubmed: 16987613
Nat Genet. 2019 Apr;51(4):611-617
pubmed: 30926969
Cell Stem Cell. 2016 Jul 7;19(1):81-94
pubmed: 27151458
Nat Commun. 2019 Jul 29;10(1):3389
pubmed: 31358756
Cell. 2015 Feb 12;160(4):644-658
pubmed: 25640237
Cell. 2013 Nov 7;155(4):807-16
pubmed: 24209619
AIDS Res Ther. 2017 Feb 16;14(1):9
pubmed: 28209198
Mol Cell Biol. 1995 Jun;15(6):3310-7
pubmed: 7760826
Science. 2013 Jan 25;339(6118):448-52
pubmed: 23223451
Nat Struct Mol Biol. 2013 Oct;20(10):1173-81
pubmed: 23995758
Nat Struct Mol Biol. 2015 Oct;22(10):824-31
pubmed: 26367248
RNA. 2018 Aug;24(8):1093-1105
pubmed: 29844106
Dev Cell. 2004 Oct;7(4):597-606
pubmed: 15469847
Sci Rep. 2019 Jun 18;9(1):8697
pubmed: 31213632
Nature. 2010 Apr 8;464(7290):927-31
pubmed: 20164836
Nat Rev Genet. 2008 Feb;9(2):129-40
pubmed: 18197165
Cell. 2018 Nov 29;175(6):1717
pubmed: 30500541
Nat Rev Genet. 2020 Jan;21(1):27-43
pubmed: 31534202
Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):12127-32
pubmed: 19564597
Genome Res. 2020 Apr;30(4):576-588
pubmed: 32303559
Science. 2001 Apr 6;292(5514):7
pubmed: 11292864
Nat Rev Genet. 2020 May;21(5):311-331
pubmed: 32051563
Nat Rev Genet. 2007 Apr;8(4):272-85
pubmed: 17363976
Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):1404-9
pubmed: 23297232
Genes Dev. 2019 Sep 1;33(17-18):1098-1116
pubmed: 31481535
Annu Rev Cell Dev Biol. 2015;31:429-51
pubmed: 26393776
Trends Cell Biol. 2018 Oct;28(10):793-806
pubmed: 29934075
Science. 2016 Nov 18;354(6314):909-912
pubmed: 27856912
Mol Cell. 2012 Dec 28;48(6):849-62
pubmed: 23219530
Reproduction. 2018 Aug;156(2):R43-R55
pubmed: 29743259
Cell. 1991 Jan 11;64(1):159-70
pubmed: 1846087
Trends Immunol. 2019 Nov;40(11):998-1010
pubmed: 31679813
Nat Rev Genet. 2012 Mar 16;13(4):283-96
pubmed: 22421730
Semin Cell Dev Biol. 2020 Jan;97:93-105
pubmed: 31551132
Nucleic Acids Res. 2010 Aug;38(15):5141-51
pubmed: 20385573
Genome Res. 2017 Aug;27(8):1384-1394
pubmed: 28522611
Nat Rev Genet. 2019 Feb;20(2):89-108
pubmed: 30446728
Nature. 2008 May 22;453(7194):534-8
pubmed: 18404147
Nat Cell Biol. 2007 Jan;9(1):64-71
pubmed: 17143267
Cell Stem Cell. 2019 May 2;24(5):724-735.e5
pubmed: 31006620
J Virol. 1994 Mar;68(3):1605-14
pubmed: 7508999
Mob DNA. 2016 Dec 1;7:24
pubmed: 27980689
EMBO J. 1990 Oct;9(10):3353-62
pubmed: 1698615
Retrovirology. 2019 Apr 4;16(1):11
pubmed: 30947720
Genomics Inform. 2014 Dec;12(4):261-7
pubmed: 25705168
Genome Biol. 2019 Oct 29;20(1):225
pubmed: 31665063
Cell. 2014 Mar 27;157(1):95-109
pubmed: 24679529
Nat Rev Genet. 2017 Feb;18(2):71-86
pubmed: 27867194
Nat Rev Mol Cell Biol. 2011 Apr;12(4):246-58
pubmed: 21427766
Retrovirology. 2015 May 29;12:45
pubmed: 26021318
Genome Res. 2013 Jan;23(1):169-80
pubmed: 22936248
Nat Genet. 2009 May;41(5):563-71
pubmed: 19377475
Nat Commun. 2020 Mar 13;11(1):1362
pubmed: 32170101
Nat Genet. 1998 Oct;20(2):116-7
pubmed: 9771701
Cell. 2005 Jan 14;120(1):15-20
pubmed: 15652477
Trends Biochem Sci. 2016 Aug;41(8):679-689
pubmed: 27263052
Biochemistry. 2003 Dec 16;42(49):14349-55
pubmed: 14661945
Cell. 2003 Dec 26;115(7):787-98
pubmed: 14697198
Proc Natl Acad Sci U S A. 2019 May 21;116(21):10372-10381
pubmed: 31068467
Cold Spring Harb Perspect Med. 2012 Oct 01;2(10):
pubmed: 23028129
J Gen Virol. 1997 Apr;78 ( Pt 4):837-40
pubmed: 9129656
Genome Biol. 2012 Jun 15;13(6):R45
pubmed: 22703977
Nature. 2014 Dec 18;516(7531):405-9
pubmed: 25317556
Mol Cell. 2016 Jun 2;62(5):766-76
pubmed: 27259207
J Virol. 2003 Aug;77(16):8695-701
pubmed: 12885888
Nat Commun. 2017 Nov 10;8(1):1411
pubmed: 29127279
Nature. 2010 Jan 14;463(7278):237-40
pubmed: 20075919
Nat Struct Mol Biol. 2013 Mar;20(3):339-46
pubmed: 23377542
Nature. 2001 Feb 15;409(6822):860-921
pubmed: 11237011
Mol Cell Biol. 1995 Jan;15(1):217-26
pubmed: 7528326
Gene. 2016 Apr 1;579(2):133-8
pubmed: 26743126
Nat Genet. 2010 Jul;42(7):631-4
pubmed: 20526341
Proc Natl Acad Sci U S A. 1992 Apr 15;89(8):3236-40
pubmed: 1314382
Science. 2011 May 13;332(6031):848-52
pubmed: 21566194
Mob DNA. 2019 Apr 13;10:15
pubmed: 31011371
Genome Res. 2008 Apr;18(4):597-609
pubmed: 18256233
Development. 2015 Jul 15;142(14):2425-30
pubmed: 26138477
Nat Rev Mol Cell Biol. 2018 Jan;19(1):45-58
pubmed: 28875994
Genome Res. 2003 Sep;13(9):1975-83
pubmed: 12952870
Nat Genet. 2018 Feb;50(2):186-192
pubmed: 29335544
Nucleic Acids Res. 2012 Aug;40(14):6787-99
pubmed: 22492706
Nature. 2017 Mar 23;543(7646):550-554
pubmed: 28273063
Nat Genet. 2014 Jun;46(6):558-66
pubmed: 24777452
Front Microbiol. 2018 Feb 13;9:178
pubmed: 29487579
Genetics. 2007 Jun;176(2):1323-37
pubmed: 17435244
Curr Opin Virol. 2013 Dec;3(6):646-56
pubmed: 24004725
Nature. 2008 May 22;453(7194):539-43
pubmed: 18404146
Nat Rev Cancer. 2017 Jul;17(7):415-424
pubmed: 28642606
Virus Res. 2017 Apr 15;234:153-176
pubmed: 28043823
Cell Rep. 2019 Oct 29;29(5):1164-1177.e5
pubmed: 31665631
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Nature. 2014 Apr 17;508(7496):411-5
pubmed: 24670663
Nat Commun. 2019 Dec 12;10(1):5674
pubmed: 31831741
RNA. 2010 Apr;16(4):673-95
pubmed: 20181738
Nat Genet. 1999 Nov;23(3):314-8
pubmed: 10545949
Genes Dev. 2009 Nov 15;23(22):2639-49
pubmed: 19933153
J Virol. 1986 Jan;57(1):37-45
pubmed: 2416955
Nucleic Acids Res. 2018 Jun 20;46(11):5753-5763
pubmed: 29750267
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Proc Natl Acad Sci U S A. 1985 Apr;82(7):2054-8
pubmed: 2580305
Mol Cell. 2012 Nov 30;48(4):509-20
pubmed: 23084833
Annu Rev Genet. 2012;46:21-42
pubmed: 22905872
Genes Dev. 2008 Apr 1;22(7):908-17
pubmed: 18381894
Arch Virol. 2018 Sep;163(9):2601-2631
pubmed: 29754305
Trends Biochem Sci. 2012 Apr;37(4):127-33
pubmed: 22178137
Genome Res. 2004 Nov;14(11):2261-7
pubmed: 15479948
Genes Dev. 2008 Oct 15;22(20):2773-85
pubmed: 18923076
Nat Struct Mol Biol. 2014 Apr;21(4):423-5
pubmed: 24681886
Nature. 2002 Dec 5;420(6915):520-62
pubmed: 12466850

Auteurs

Harrison Cullen (H)

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

Andrea J Schorn (AJ)

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH