A Transposon Story: From TE Content to TE Dynamic Invasion of

Animals DNA Transposable Elements / immunology Drosophila / immunology Drosophila melanogaster / immunology Nanopores
Drosophila melanogaster Drosophila simulans ONT piRNA transposable elements

Journal

Cells
ISSN: 2073-4409
Titre abrégé: Cells
Pays: Switzerland
ID NLM: 101600052

Informations de publication

Date de publication:
25 07 2020
Historique:
received: 27 06 2020
revised: 17 07 2020
accepted: 23 07 2020
entrez: 30 7 2020
pubmed: 30 7 2020
medline: 1 4 2021
Statut: epublish

Résumé

Transposable elements (TEs) are the main components of genomes. However, due to their repetitive nature, they are very difficult to study using data obtained with short-read sequencing technologies. Here, we describe an efficient pipeline to accurately recover TE insertion (TEI) sites and sequences from long reads obtained by Oxford Nanopore Technology (ONT) sequencing. With this pipeline, we could precisely describe the landscapes of the most recent TEIs in wild-type strains of

Identifiants

DOI: 10.3390/cells9081776 PMID: 32722451 PMC: PMC7465170
pubmed: 32722451
pii: cells9081776
doi: 10.3390/cells9081776
pmc: PMC7465170
pii:
doi:

Substances chimiques

DNA Transposable Elements 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

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Auteurs

Mourdas Mohamed (M)

Institute of Human Genetics, UMR9002, CNRS and Montpellier University, 34396 Montpellier, France.
ORCID: 0000-0002-7522-0724

Nguyet Thi-Minh Dang (NT)

IRD/UM UMR DIADE, 911 avenue Agropolis BP64501, 34394 Montpellier, France.
ORCID: 0000-0002-6776-2830

Yuki Ogyama (Y)

Institute of Human Genetics, UMR9002, CNRS and Montpellier University, 34396 Montpellier, France.

Nelly Burlet (N)

Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, 69622 Villeurbanne, France.
ORCID: 0000-0003-3231-4154

Bruno Mugat (B)

Institute of Human Genetics, UMR9002, CNRS and Montpellier University, 34396 Montpellier, France.
ORCID: 0000-0002-7749-3283

Matthieu Boulesteix (M)

Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, 69622 Villeurbanne, France.

Vincent Mérel (V)

Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, 69622 Villeurbanne, France.

Philippe Veber (P)

Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, 69622 Villeurbanne, France.

Judit Salces-Ortiz (J)

Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, 69622 Villeurbanne, France.
Institute of Evolutionary Biology (IBE), CSIC-Universitat Pompeu Fabra, 08003 Barcelona, Spain.

Dany Severac (D)

MGX-Montpellier GenomiX, c/o Institut de Génomique Fonctionnelle, CNRS, INSERM, Université de Montpellier, 34094 Montpellier, France.

Alain Pélisson (A)

Institute of Human Genetics, UMR9002, CNRS and Montpellier University, 34396 Montpellier, France.

Cristina Vieira (C)

Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, 69622 Villeurbanne, France.

François Sabot (F)

IRD/UM UMR DIADE, 911 avenue Agropolis BP64501, 34394 Montpellier, France.
ORCID: 0000-0002-8522-7583

Marie Fablet (M)

Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, 69622 Villeurbanne, France.

Séverine Chambeyron (S)

Institute of Human Genetics, UMR9002, CNRS and Montpellier University, 34396 Montpellier, France.
ORCID: 0000-0003-2775-6556

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › A Transposon Story: From TE Content to TE...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Séquences répétées dispersées › Éléments transposables d'ADN › A Transposon Story: From TE Content to TE...
questionsmedicales.fr › Eucaryotes › Animaux › Invertébrés › Arthropodes › Insectes › Pterygota › Neoptera › Holometabola › Diptera › Drosophilidae › Drosophila › A Transposon Story: From TE Content to TE...
questionsmedicales.fr › Eucaryotes › Animaux › Invertébrés › Arthropodes › Insectes › Pterygota › Neoptera › Holometabola › Diptera › Drosophilidae › Drosophila › Drosophila melanogaster › A Transposon Story: From TE Content to TE...
questionsmedicales.fr › Technologie, industrie et agriculture › Produits manufacturés › Nanostructures › Nanopores › A Transposon Story: From TE Content to TE...