De Novo Transcriptome Assembly and Gene Expression Profiling of the Copepod


Journal

Marine drugs
ISSN: 1660-3397
Titre abrégé: Mar Drugs
Pays: Switzerland
ID NLM: 101213729

Informations de publication

Date de publication:
27 Jul 2020
Historique:
received: 02 07 2020
revised: 21 07 2020
accepted: 23 07 2020
entrez: 31 7 2020
pubmed: 31 7 2020
medline: 19 5 2021
Statut: epublish

Résumé

Diatoms are the dominant component of the marine phytoplankton. Several diatoms produce secondary metabolites, namely oxylipins, with teratogenic effects on their main predators, crustacean copepods. Our study reports the de novo assembled transcriptome of the calanoid copepod

Identifiants

pubmed: 32727111
pii: md18080392
doi: 10.3390/md18080392
pmc: PMC7460014
pii:
doi:

Substances chimiques

Aldehydes 0
Oxylipins 0

Types de publication

Comparative Study Journal Article

Langues

eng

Sous-ensembles de citation

IM

Références

PLoS One. 2014 Nov 10;9(11):e112522
pubmed: 25383890
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Fish Shellfish Immunol. 2013 Dec;35(6):2008-16
pubmed: 24055647
Biomed Res Int. 2014;2014:493825
pubmed: 24982883
BMC Dev Biol. 2012 Apr 05;12:12
pubmed: 22480165
Dev Genes Evol. 2011 Mar;220(11-12):337-45
pubmed: 21327957
PLoS One. 2014 Jul 03;9(7):e101220
pubmed: 24992192
Toxicol Ind Health. 2007 Nov;23(10):591-8
pubmed: 18717517
Protist. 2009 Aug;160(3):444-51
pubmed: 19386544
J Exp Biol. 2008 May;211(Pt 9):1426-33
pubmed: 18424676
PLoS One. 2014 Feb 19;9(2):e88589
pubmed: 24586345
Sci Rep. 2016 May 16;6:25708
pubmed: 27181871
Curr Biol. 2008 Jun 24;18(12):895-9
pubmed: 18538570
Mar Genomics. 2015 Dec;24 Pt 1:115-8
pubmed: 25546577
Aquat Toxicol. 2010 Aug 15;99(2):212-22
pubmed: 20537412
Cold Spring Harb Perspect Biol. 2012 Aug 01;4(8):a005975
pubmed: 22855721
Nucleic Acids Res. 2002 May 1;30(9):e36
pubmed: 11972351
Proc Natl Acad Sci U S A. 1997 May 13;94(10):5162-6
pubmed: 9144208
Am J Clin Nutr. 2010 Jan;91(1):160-5
pubmed: 19923375
Chemosphere. 2018 Oct;209:163-172
pubmed: 29929122
Genome Biol. 2009;10(3):R25
pubmed: 19261174
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W622-7
pubmed: 22684630
Nat Biotechnol. 2011 May 15;29(7):644-52
pubmed: 21572440
PLoS One. 2013;8(3):e58627
pubmed: 23527000
Prog Biophys Mol Biol. 1989;53(1):33-69
pubmed: 2682782
Front Zool. 2014 Dec 16;11(1):91
pubmed: 25568661
BMC Biotechnol. 2013 Nov 05;13:96
pubmed: 24188141
Genome Biol. 2008;9(2):R40
pubmed: 18291039
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W293-7
pubmed: 16845012
Cell. 1988 Nov 4;55(3):487-95
pubmed: 2460244
Innate Immun. 2009 Jun;15(3):179-88
pubmed: 19474211
Comp Biochem Physiol C Toxicol Pharmacol. 2009 Sep;150(3):406-13
pubmed: 19559812
PLoS One. 2012;7(10):e47262
pubmed: 23056617
PLoS One. 2011;6(10):e26850
pubmed: 22046381
Chembiochem. 2007 Oct 15;8(15):1810-8
pubmed: 17886321
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5
pubmed: 17526522
Cell. 1995 Apr 7;81(1):95-105
pubmed: 7720077
Dev Biol. 2008 Jul 15;319(2):359-69
pubmed: 18514182
J Cell Biochem. 2008 Oct 1;105(2):467-76
pubmed: 18615588
Development. 2002 Oct;129(19):4371-86
pubmed: 12223397
Cell. 1995 Feb 24;80(4):563-72
pubmed: 7867064
Curr Biol. 2003 Jun 17;13(12):1058-63
pubmed: 12814553
Harmful Algae. 2014 Jan;31:153-162
pubmed: 28040104
Crit Rev Biochem Mol Biol. 2008 Mar-Apr;43(2):135-62
pubmed: 18365862
Toxicol Sci. 2006 Feb;89(2):495-503
pubmed: 16280378
BMC Bioinformatics. 2011 Aug 04;12:323
pubmed: 21816040
Biochim Biophys Acta. 2014 Jul;1840(7):2340-50
pubmed: 24747731
Hum Mol Genet. 2009 Oct 15;18(R2):R113-29
pubmed: 19808787
ISME J. 2020 Jan;14(1):164-177
pubmed: 31611654
Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13892-6
pubmed: 19666517
Toxicol Sci. 2007 Oct;99(2):522-31
pubmed: 17519396
Bioinformatics. 2005 Sep 15;21(18):3674-6
pubmed: 16081474
Biol Reprod. 2004 May;70(5):1392-9
pubmed: 14695913
Teratology. 1985 Jun;31(3):363-71
pubmed: 3842933
Adv Mar Biol. 2005;47:253-309
pubmed: 15596169
Mar Environ Res. 2019 Jan;143:10-23
pubmed: 30415781
Sci Rep. 2018 Aug 22;8(1):12577
pubmed: 30135598
Nature. 1989 Mar 30;338(6214):432-4
pubmed: 2564639
Cell. 2013 Sep 26;155(1):81-93
pubmed: 24074862
PLoS One. 2013 May 06;8(5):e63741
pubmed: 23671698
Genes Dev. 2008 Jun 15;22(12):1607-16
pubmed: 18559477
Oxid Med Cell Longev. 2014;2014:360438
pubmed: 24999379
PLoS One. 2014 Jan 31;9(1):e85947
pubmed: 24497933
PLoS One. 2012;7(10):e47442
pubmed: 23071809
Harmful Algae. 2016 May;55:221-229
pubmed: 28073535
PLoS One. 2017 Oct 24;12(10):e0186794
pubmed: 29065152
Nature. 2004 May 27;429(6990):403-7
pubmed: 15164060
Circ Res. 2007 May 11;100(9):1276-91
pubmed: 17495234
Sci Rep. 2018 Apr 4;8(1):5622
pubmed: 29618786

Auteurs

Sneha Asai (S)

Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy.

Remo Sanges (R)

Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy.
Area of Neuroscience, Scuola Internazionale Superiore di Studi Avanzati (SISSA), 34136 Trieste, Italy.

Chiara Lauritano (C)

Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy.

Penelope K Lindeque (PK)

Plymouth Marine Laboratory, Prospect Place, Plymouth PL1 3DH, UK.

Francesco Esposito (F)

Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy.

Adrianna Ianora (A)

Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy.

Ylenia Carotenuto (Y)

Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli, Italy.

Articles similaires

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male
Humans Meals Time Factors Female Adult

Classifications MeSH