Improving laboratory diagnostic capacities of emerging diseases using knowledge mapping.
capacity
diagnostic
emerging diseases
epizootic diseases
knowledge mapping
laboratories
preparedness
prioritization
Journal
Transboundary and emerging diseases
ISSN: 1865-1682
Titre abrégé: Transbound Emerg Dis
Pays: Germany
ID NLM: 101319538
Informations de publication
Date de publication:
May 2021
May 2021
Historique:
revised:
09
07
2020
received:
16
02
2020
accepted:
29
07
2020
pubmed:
5
8
2020
medline:
16
6
2021
entrez:
5
8
2020
Statut:
ppublish
Résumé
Over the last decade, European countries faced several emerging and re-emerging animal diseases as well as zoonotic diseases. During these episodes, the laboratory diagnostic capabilities were a key factor to rapidly control and/or eradicate them. Because of the associated socio-economic and health consequences, it is crucial to react rapidly and efficiently, not only during crisis but also in peacetime (i.e. preparedness). However, to date, there is no published method to identify diseases with diagnostic gaps and to prioritize assays to be implemented. This study was conducted based on the outcome of a prioritization exercise in which 29 epizootic and exotic diseases with high risk of emergence or re-emergence in Belgium (Bianchini et al., [2020] Transboundary and Emerging Diseases, 67(1), 344-376) were listed. Knowledge mapping was used to visualize and identify gaps in the diagnostic procedures for different epidemiological scenarios at national level. To fill these gaps, an overview of diagnostic capabilities at national and international level (laboratories and kits providers or manufacturers) as well as the published assays in the scientific literature and the prescribed assays by international institutions and kits providers was carried out. The outcome of this study revealed the usefulness of knowledge mapping as a tool to identify gaps and ultimately gain insight on alternatives for better preparedness and responsiveness. While this exercise was limited to Belgium, we believe this exercise can benefit other countries and thereby enhancing knowledge sharing and collaboration to increase diagnostic capabilities for a common list of (re-) emerging diseases in crisis situation.
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1175-1189Subventions
Organisme : Belgian Federal Public Service of Health, Food Chain Safety and Environment
ID : RT13/3 EPIDIACAP
Informations de copyright
© 2020 Wiley-VCH GmbH.
Références
Agence nationale de sécurité sanitaire de l’alimentation, de l’environnement et du travail (2012). Méthodologie de hiérarchisation des maladies animales: application aux agents pathogènes exotiques pour la France métropolitaine. Anses, Maisons-Alfort, France, 152 p. [in French]. Retrieved 04.11.2019 from https://www.anses.fr/fr/system/files/SANT2008sa0390Ra.pdf
Akashi, H., Onuma, S., Nagano, H., Ohta, M., & Fukutomi, T. (1999). Detection and differentiation of Aino and Akabane Simbu serogroup bunyaviruses by nested polymerase chain reaction. Archives of Virology, 144, 2101-2109. https://doi.org/10.1007/s007050050625
Anonymous. (2009). Recent trends in emerging infectious diseases. International Journal of Health Sciences, 3, V-VIII.
Bianchini, J., Humblet, M. F., Cargnel, M., Van der Stede, Y., Koenen, F., de Clercq, K., & Saegerman, C. (2020). Prioritization of livestock transboundary diseases in Belgium using a multicriteria decision analysis tool based on drivers of emergence. Transboundary and Emerging Diseases, 67(1), 344-376. https://doi.org/10.1111/tbed.13356
Blitvich, B. J., Loroño-Pino, M. A., Garcia-Rejon, J. E., Farfan-Ale, J. A., & Dorman, K. S. (2012). Nucleotide sequencing and serologic analysis of Cache Valley virus isolates from the Yucatan Peninsula of Mexico. Virus Genes, 45, 176-180. https://doi.org/10.1007/s11262-012-0741-x
Bouma, A., Elbers, A. R., Dekker, A., De Koeijer, A., Bartels, C., Vellema, P., … De Jong, M. C. (2003). The epidemic of foot-and-mouth disease in The Netherlands in 2001: Laboratory examinations. Preventive Veterinary Medicine, 20, 155-166. https://doi.org/10.1016/S0167-5877(02)00217-9
Coffey, J. W. (2015). Concept mapping and knowledge modeling: A Multi-Disciplinary Educational, Informational, and Communication Technology. Systemics, Cybernetics and Informatics, 13(6), 122-128.
Ding, G., Fu, Y., Li, B., Jianing, C., Baishuang, Y., Wanli, S., & Guangliang, L. (2020). Development of a multiplex RT-PCR for the detection of major diarrhoeal viruses in pig herds in China. Transboundary and Emerging Diseases, 67, 678-685. https://doi.org/10.1111/tbed.13385
Elbers, A. R., Stockhofe-Zurwieden, N., & Van der Poel, W. H. (2014). Schmallenberg virus antibody persistence in adult cattle after natural infection and decay of maternal antibodies in calves. BMC Veterinary Research, 10(1), 103. https://doi.org/10.1186/1746-6148-10-103
Elnifro, E. M., Ashshi, A. M., Cooper, R. J., & Klapper, P. E. (2000). Multiplex PCR: Optimization and application in diagnostic virology. Clinical Microbiology Reviews, 13(4), 559-570. https://doi.org/10.1128/cmr.13.4.559-570.2000
European Food Safety Authority (2012). Scientific opinion on swine vesicular disease and vesicular stomatitis. EFSA Journal, 10(4), 2631. https://doi.org/10.2903/j.efsa.2012.2631
European Union (2016). Regulation (EU) 2016/429 of the European Parliament and of the Council of 9 March 2016 on transmissible animal diseases and amending and repealing certain acts in the area of animal health (‘Animal Health Law’). Retrieved 02.12.2019 from https://eur-lex.europa.eu/eli/reg/2016/429/oj
Gebreyes, W. A., Dupouy-Camet, J.,Newport, M. J., Oliveira, C. J. B., Schlesinger, L. S., Saif, Y. M., … King, L. J.(2014). The global one health paradigm: Challenges and opportunities for tackling infectious diseases at the human, animal, and environment interface in low-resource settings. PLoS Neglected Tropical Diseases, 8(11), e3257. 3210.1371/journal.pntd.0003257
Gimenez-Lirola, L. G., Zhang, J., Carrillo-Avilla, J. A., Chen, Q., Magtoto, R., Poonsuk, K., … Zimmerman, J. (2017). Reactivity of porcine epidemic diarrhea virus structural proteins to antibodies against porcine enteric coronaviruses: Diagnostic implications. Journal of Clinical Microbiology, 55(5), 1426-1436. https://doi.org/10.1128/JCM.02507-16
Ho, V. W., Harris, P. G., Kumar, R. K., & Velan, G. M. (2018). Knowledge maps: A tool for online assessment with automated feedback. Medical Education Online, 23(1), 1457394. https://doi.org/10.1080/10872981.2018.1457394
Jones, K. E., Patel, N. G., Levy, M. A., Storeygard, A., Balk, D., Gittleman, J. L., & Daszak, P. (2008). Global trends in emerging infectious diseases. Nature, 451, 990-993. https://doi.org/10.1038/nature06536
Katz, J. M., Hancock, K., & Xu, X. (2011). Serologic assays for influenza surveillance, diagnosis and vaccine evaluation. Expert Review of Anti-Infective Therapy, 9(6), 669-683. https://doi.org/10.1586/eri.11.51
Kimpston-Burkgren, K., Mora-Díaz, J. C., Roby, P., Bjustrom-Kraft, J., Main, R., Bosse, R., & Giménez-Lirola, L. G.(2020). Article characterization of the humoral immune response to porcine epidemic diarrhea virus infection under experimental and field conditions using an AlphaLISA platform. Pathogens, 9, 233. https://doi.org/10.3390/pathogens9030233
King, L. (2008). Emerging animal diseases: From science to policy (pp. 15-18). Brussels, Belgium: Federal Agency for Safety of the Food Chain. Retrieved 04.11.2019 from http://www.afsca.be/scientificcommittee/publications/brochures/_documents/2008_WS_SciCom_en.pdf
Koenen, F., Uttenthal, A., & Meindl-Böhmer, A. (2007). Real-time laboratory exercises to test contingency plans for classical swine fever: Experiences from two national laboratories. Revue Scientifique Et Technique, 26(3), 629-638. https://doi.org/10.20506/rst.26.3.1769
Lee, J.-H., Seo, H.-J., Park, J.-Y., Kim, S.-H., Cho, Y. S., Kim, Y.-J., … Jeoung, H.-Y. (2015). Detection and differentiation of Schmallenberg, Akabane and Aino viruses by one-step multiplex reverse-transcriptase quantitative PCR assay. BMC Veterinary Research, 11, 270. https://doi.org/10.1186/s12917-015-0582-7
Lu, M., Liu, Q., Wang, X., Zhang, J., Zhang, X., Shi, D., … Feng, L. (2020). Development of an indirect ELISA for detecting porcine deltacoronavirus IgA antibodies. Archives of Virology, 165, 845-851. https://doi.org/10.1007/s00705-020-04541-6
MacLachlan, N. J., Edward, J., & Dubovi, E. J.(2011). Chapter 5 - Laboratory diagnosis of viral infections. In N. J. Maclachlan & E. J. Dubovi (Eds.), Fenner's Veterinary virology (Fourth Edition) (pp. 101-123). Cambridge, MA: Academic Press.
Morse, S. S., Mazet, J. A. K., Woolhouse, M., Parrish, C. R., Carroll, D., Karesh, W. B., … Daszak, P. (2012). Prediction and prevention of the next pandemic zoonosis. Lancet, 380, 1956-1965, https://doi.org/10.1016/S0140-6736(12)61684-5
Muir-Paulik, S. A., Johnson, L. E. A., Kennedy, P., Aden, T., Villanueva, J., Reisdorf, E., … Moen, A. C. (2016). Measuring laboratory-based influenza surveillance capacity: Development of the 'International Influenza Laboratory Capacity Review' Tool. Public Health, 130, 72-77. https://doi.org/10.1016/j.puhe.2015.09.007
O'Brien, D., Scudamore, J., Charlier, J., & Delavergne M.,(2017). DISCONTOOLS: A database to identify research gaps on vaccines, pharmaceuticals and diagnostics for the control of infectious diseases of animals. BMC Veterinary Research, 13(1), 1. https://doi.org/10.1186/s12917-016-0931-1
Petersen, A., Bisgaard, M., Townsend, K., & Christensen, H. (2014). MLST typing of Pasteurella multocida associated with haemorrhagic septicaemia and development of a real-time PCR specific for haemorrhagic septicaemia associated isolates. Veterinary Microbiology, 170(3-4), 335-341. https://doi.org/10.1016/j.vetmic.2014.02.022
Reviriego Gordejo, F., Laddomada, A., & Van Goethemm, B. (2009). Politique Européenne de prévention et de contrôle de la fièvre catarrhale ovine. In: C. Saegerman, F. Reviriego-Gordejo, & P.-P. Pastoret (Eds.), Fièvre catarrhale ovine en Europe du nord. World Organisation for Animal Health and Epidemiology and risk analysis applied to veterinary sciences (pp. 24-28). Paris [in French]. Retrieved 04.11.2019 from https://www.oie.int/doc/ged/d11507.pdf
Rodriguez-Prieto, V., Vicente-Rubiano, M., Sánchez-Matamoros, A., Rubio-Guerri, C., Melero, M., Martínez-López, B., … Sánchez-Vizcaíno, J. M. (2015). Systematic review of surveillance systems and methods for early detection of exotic, new and re-emerging diseases in animal populations. Epidemiology and Infection, 143(10), 2018-2042. 2010.1017/S095026881400212X
Savigny, D., & Taghreed, A. (2009). Systems thinking for health systems strengthening. In D. de Savigny, & T. Adam (Eds), Alliance for Health Policy and Systems Research. WHO. Retrieved 04.11.2019, from http://apps.who.int/iris/bitstream/10665/44204/1/9789241563895_eng.pdf?ua=1
Shen, C.-H. (2019). Chapter 9 - amplification of nucleic acids, In C.-H. Shen (Eds.), Diagnostic molecular biology (pp. 215-247). https://doi.org/10.1016/B978-0-12-802823-0.00009-2.
Shin, Y.-K., Oem, J.-K., Yoon, S., Hyun, B.-H., Cho, I.-S., Yoon, S.-S., & Song, J.-Y. (2009). Monitoring of five bovine arboviral diseases transmitted by arthropod vectors in Korea. Journal of Bacteriology and Virology, 39, 353-362. https://doi.org/10.4167/jbv.2009.39.4.353
Souza Monteiro, D. M., Carrasco, L. R., Moffitt, L. J., & Cook, A. J. (2012). Robust surveillance of animal diseases: An application to the detection of bluetongue disease. Preventive Veterinary Medicine, 105(1-2), 17-24. https://doi.org/10.1016/j.prevetmed.2012.01.011
Toma, B., & Thiry, E. (2003). Qu'est ce qu'une maladie émergente? Epidémiologie Et Santé Animale, 44, 1-11.
Vallat, B. (2016). Emerging and re-emerging zoonoses. Retrieved 04.11.2019, from https://www.oie.int/en/for-the-media/editorials/detail/article/emerging-and-re-emerging-zoonoses/
Van Bon-Martens, M. J., van de Goor, L. A., Holsappel, J. C., Kuunders, T. J., Jacobs-van der Bruggen, M. A., te Brake, J. H., & van Oers, J. A. (2014). Concept mapping as a promising method to bring practice into science. Public Health, 128(6), 504-514. https://doi.org/10.1016/j.puhe.2014.04.002
Van Nieuwstadt, A. P., & Zetstra, T. (1991). Use of two enzyme-linked immunosorbent assays to monitor antibody responses in swine with experimentally induced infection with porcine epidemic diarrhea virus. American Journal of Veterinary Research, 52(7), 1044-1050.
Vandenbussche, F., Vanbinst, T., Verheyden, B., Van Dessel, W., Demeestere, L., Houdart, P., … De Clercq, K. (2008). Evaluation of antibody-ELISA and real-time RT-PCR for the diagnosis and profiling of bluetongue virus serotype 8 during the epidemic in Belgium in 2006. Veterinary Microbiology, 129, 15-27. https://doi.org/10.1016/j.vetmic.2007.10.029
Wang, H., Nattanmai, S., Kramer, L. D., Bernard, K. A., & Tavakoli, N. P. (2009). A duplex real-time reverse transcriptase polymerase chain reaction assay for the detection of California serogroup and Cache Valley viruses. Diagnostic Microbiology and Infectious Disease, 65, 150-157. https://doi.org/10.1016/j.diagmicrobio.2009.07.001
Weir, R. P. (2013). Australia and New Zealand Standard Diagnostic Procedures. Aino virus. Retrieved 04.11.2019 from http://www.agriculture.gov.au/SiteCollectionDocuments/animal/ahl/ANZSDP-Aino-virus.pdf
Welby, S., Méroc, E., Faes, C., De Clercq, K., Hooyberghs, J., Mintiens, K., & Van der Stede, Y. (2013). Bluetongue surveillance system in Belgium: A stochastic evaluation of its risk-based approach effectiveness. Preventive Veterinary Medicine, 112, 48-57. https://doi.org/10.1016/j.prevetmed.2013.07.005
Westergaard, J. M. (2008). Contingency planning: Preparation of contingency plans. Zoonoses Public Health, 55(1), 42-49. https://doi.org/10.1111/j.1863-2378.2007.01088.x
Wilson, W. C., Daniels, P., Ostlund, E. N., Johnson, D. E., Oberst, R. D., Hairgrove, T. B., … McIntosh, M. T. (2015). Molecular evolution of American field strains of bluetongue and epizootic haemorrhagic disease viruses. Veterinaria Italiana, 51(4), 269-273. https://doi.org/10.12834/VetIt.555.2627.1
World Organisation for Animal Health (2015). Vesicular stomatitis. Retrieved 04.11.2019, from https://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/3.01.23_VESICULAR_STOMATITIS.pdf
World Organisation for Animal Health (2018). Haemorrhagic septicemia. Retrieved 04.11.2019, from https://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/3.04.10_HAEMORRHAGIC_SEPTICAEMIA.pdf
World Organisation for Animal Health (2018). Nipah and Hendra virus diseases. Retrieved 04.11.2019, from https://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/3.01.14_NIPAH_HENDRA.pdf