A Long Non-coding RNA,

hepatic glycogen storage insulin resistance long non-coding RNA metabolism regulatory mechanisms type 2 diabetes

Journal

Frontiers in genetics
ISSN: 1664-8021
Titre abrégé: Front Genet
Pays: Switzerland
ID NLM: 101560621

Informations de publication

Date de publication:
2020
Historique:
received: 20 12 2019
accepted: 20 05 2020
entrez: 6 8 2020
pubmed: 6 8 2020
medline: 6 8 2020
Statut: epublish

Résumé

Causal transcripts at genomic loci associated with type 2 diabetes (T2D) are mostly unknown. The chr8p23.1 variant rs4841132, associated with an insulin-resistant diabetes risk phenotype, lies in the second exon of a long non-coding RNA (lncRNA) gene, We tested our hypothesis using Stellaris fluorescent We found that siRNA knockdown decreased We show that the lncRNA

Identifiants

pubmed: 32754192
doi: 10.3389/fgene.2020.00615
pmc: PMC7367044
doi:

Types de publication

Journal Article

Langues

eng

Pagination

615

Subventions

Organisme : NIDDK NIH HHS
ID : K23 DK114551
Pays : United States
Organisme : NIDDK NIH HHS
ID : L30 DK106874
Pays : United States
Organisme : NIDDK NIH HHS
ID : U01 DK078616
Pays : United States
Organisme : NIDDK NIH HHS
ID : UM1 DK078616
Pays : United States

Informations de copyright

Copyright © 2020 Manning, Goustin, Kleinbrink, Thepsuwan, Cai, Ju, Leong, Udler, Brown, Goodarzi, Rotter, Sladek, Meigs and Lipovich.

Références

PLoS One. 2019 Jan 10;14(1):e0210114
pubmed: 30629617
PLoS Genet. 2011 Mar;7(3):e1001324
pubmed: 21423719
Nature. 2016 Aug 4;536(7614):41-47
pubmed: 27398621
Atherosclerosis. 2013 May;228(1):175-80
pubmed: 23477746
J Biol Chem. 2000 Aug 25;275(34):26396-403
pubmed: 10862764
PLoS Genet. 2012;8(8):e1002907
pubmed: 22916037
Nat Genet. 2018 Nov;50(11):1505-1513
pubmed: 30297969
PLoS One. 2015 Mar 13;10(3):e0118859
pubmed: 25768928
Hepatol Commun. 2018 Apr 25;2(6):666-675
pubmed: 29881818
Hepatology. 2018 Jun;67(6):2182-2195
pubmed: 29266543
Nat Rev Mol Cell Biol. 2006 Nov;7(11):867-73
pubmed: 17057754
Nature. 2014 Mar 27;507(7493):462-70
pubmed: 24670764
J Cell Biol. 1996 Mar;132(6):1133-49
pubmed: 8601590
Circ Cardiovasc Genet. 2016 Jun;9(3):223-30
pubmed: 27071970
Diabetes. 2015 Nov;64(11):3951-62
pubmed: 26159176
Front Genet. 2013 Sep 26;4:183
pubmed: 24133500
Science. 2005 Sep 2;309(5740):1564-6
pubmed: 16141073
Nat Genet. 2012 May 13;44(6):659-69
pubmed: 22581228
Nucleic Acids Res. 2012 May;40(10):4288-97
pubmed: 22287627
Cell. 2010 Oct 1;143(1):46-58
pubmed: 20887892
Am J Hum Genet. 2018 Mar 01;102(3):375-400
pubmed: 29455858
Am J Epidemiol. 1981 Feb;113(2):144-56
pubmed: 7468572
Nat Genet. 2014 Feb;46(2):136-143
pubmed: 24413736
Curr Cardiovasc Risk Rep. 2014 Jan 1;8(1):368
pubmed: 24729826
BMC Med Genet. 2008 May 22;9:45
pubmed: 18498634
Curr Pharm Des. 2016;22(37):5730-5737
pubmed: 27356775
Nat Commun. 2015 Jan 29;6:5897
pubmed: 25631608
Cell Metab. 2012 Oct 3;16(4):435-48
pubmed: 23040067
Am J Hum Genet. 2016 Jul 7;99(1):56-75
pubmed: 27321945
Nat Genet. 2013 Nov;45(11):1274-1283
pubmed: 24097068
J Hum Genet. 2006;51(12):1087-1099
pubmed: 17066261
Mol Aspects Med. 2015 Dec;46:34-45
pubmed: 26519772
Front Genet. 2018 Nov 06;9:524
pubmed: 30459811
PLoS Genet. 2015 Dec 01;11(12):e1005694
pubmed: 26624892
Ann Hum Genet. 2006 Sep;70(Pt 5):587-93
pubmed: 16907705
Diabetes Care. 2006 Sep;29(9):2114-6
pubmed: 16936162
Nat Commun. 2018 Apr 17;9(1):1512
pubmed: 29666371
Genome Biol. 2010;11(10):R106
pubmed: 20979621
Hum Mol Genet. 2017 May 15;26(10):1966-1978
pubmed: 28334935
Anal Biochem. 1996 May 1;236(2):296-301
pubmed: 8660508
PLoS One. 2018 Jun 18;13(6):e0198166
pubmed: 29912962
Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):2301-2306
pubmed: 28193859
Cell Metab. 2017 Feb 7;25(2):400-411
pubmed: 28041957
Nature. 2010 Aug 5;466(7307):707-13
pubmed: 20686565
Biostatistics. 2013 Apr;14(2):232-43
pubmed: 23001152
Nat Genet. 2018 Apr;50(4):559-571
pubmed: 29632382
Diabetes. 2013 Sep;62(9):3282-91
pubmed: 23903356
Genes Dev. 2016 Mar 1;30(5):502-7
pubmed: 26944677
Diabetes. 2017 Sep;66(9):2521-2530
pubmed: 28684635
J Biol Chem. 2002 Jan 11;277(2):1524-30
pubmed: 11707447
Am J Hum Genet. 2018 Apr 5;102(4):620-635
pubmed: 29625024
Nat Commun. 2016 Jun 29;7:11764
pubmed: 27353450
Nat Commun. 2016 Aug 19;7:12429
pubmed: 27539542
Science. 2015 May 8;348(6235):648-60
pubmed: 25954001
Diabetes. 2000 Dec;49(12):1967-77
pubmed: 11117996
Mol Biosyst. 2016 Feb;12(2):477-9
pubmed: 26661513
PLoS Genet. 2011 Feb 10;7(2):e1001300
pubmed: 21347282
FEBS Lett. 1995 Nov 20;375(3):294-8
pubmed: 7498521
PLoS Genet. 2006 Apr;2(4):e47
pubmed: 16683030
N Engl J Med. 2019 Jan 3;380(1):57-70
pubmed: 30601736
Diabet Med. 2016 Jul;33(7):968-75
pubmed: 26433129
J Hum Genet. 2017 Jan;62(1):97-104
pubmed: 27305986

Auteurs

Alisa K Manning (AK)

Clinical and Translational Epidemiology Unit, Mongan Institute, Massachusetts General Hospital, Boston, MA, United States.
Department of Medicine, Harvard Medical School, Boston, MA, United States.
Programs in Metabolism and Medical & Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, United States.

Anton Scott Goustin (AS)

Center for Molecular Medicine & Genetics, Wayne State University, Detroit, MI, United States.

Erica L Kleinbrink (EL)

Center for Molecular Medicine & Genetics, Wayne State University, Detroit, MI, United States.

Pattaraporn Thepsuwan (P)

Center for Molecular Medicine & Genetics, Wayne State University, Detroit, MI, United States.

Juan Cai (J)

Center for Molecular Medicine & Genetics, Wayne State University, Detroit, MI, United States.

Donghong Ju (D)

Center for Molecular Medicine & Genetics, Wayne State University, Detroit, MI, United States.
Karmanos Cancer Institute at Wayne State University, Detroit, MI, United States.

Aaron Leong (A)

Programs in Metabolism and Medical & Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, United States.
Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, United States.
Division of General Internal Medicine, Massachusetts General Hospital, Boston, MA, United States.

Miriam S Udler (MS)

Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, United States.
Diabetes Unit, Massachusetts General Hospital, Boston, MA, United States.

James Bentley Brown (JB)

Department of Statistics, University of California, Berkeley, Berkeley, CA, United States.
Centre for Computational Biology, University of Birmingham, Birmingham, United Kingdom.
Computational Biosciences Group, Biosciences Area, Lawrence Berkeley National Laboratory, Berkeley, CA, United States.

Mark O Goodarzi (MO)

Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, United States.

Jerome I Rotter (JI)

The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, The Lundquist Institute for Biomedical Innovation at Harbor-UCLA Medical Center, Torrance, CA, United States.

Robert Sladek (R)

Department of Human Genetics, McGill University, Montréal, QC, Canada.
Department of Medicine, McGill University, Montréal, QC, Canada.
McGill University and Genome Québec Innovation Centre, Montréal, QC, Canada.

James B Meigs (JB)

Department of Medicine, Harvard Medical School, Boston, MA, United States.
Programs in Metabolism and Medical & Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, United States.
Division of General Internal Medicine, Massachusetts General Hospital, Boston, MA, United States.

Leonard Lipovich (L)

Center for Molecular Medicine & Genetics, Wayne State University, Detroit, MI, United States.
Department of Neurology, School of Medicine, Wayne State University, Detroit, MI, United States.

Classifications MeSH