Generation and application of river network analogues for use in ecology and evolution.
biodiversity
dispersal
ecological modeling
landscape
metacommunity
optimal channel network
river networks
spanning trees
Journal
Ecology and evolution
ISSN: 2045-7758
Titre abrégé: Ecol Evol
Pays: England
ID NLM: 101566408
Informations de publication
Date de publication:
Jul 2020
Jul 2020
Historique:
received:
27
02
2020
revised:
21
05
2020
accepted:
26
05
2020
entrez:
8
8
2020
pubmed:
8
8
2020
medline:
8
8
2020
Statut:
epublish
Résumé
Several key processes in freshwater ecology are governed by the connectivity inherent to dendritic river networks. These have extensively been analyzed from a geomorphological and hydrological viewpoint, yet structures classically used in ecological modeling have been poorly representative of the structure of real river basins, often failing to capture well-known scaling features of natural rivers. Pioneering work identified optimal channel networks (OCNs) as spanning trees reproducing all scaling features characteristic of natural stream networks worldwide. While OCNs have been used to create landscapes for studies on metapopulations, biodiversity, and epidemiology, their generation has not been generally accessible.Given the increasing interest in dendritic riverine networks by ecologists and evolutionary biologists, we here present a method to generate OCNs and, to facilitate its application, we provide the R-package
Identifiants
pubmed: 32760547
doi: 10.1002/ece3.6479
pii: ECE36479
pmc: PMC7391543
doi:
Types de publication
Journal Article
Langues
eng
Pagination
7537-7550Informations de copyright
© 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.
Déclaration de conflit d'intérêts
The authors declare no conflict of interest.
Références
J Theor Biol. 2012 Mar 21;297:11-6
pubmed: 22155351
Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2417-24
pubmed: 24550264
Ecol Lett. 2014 Mar;17(3):273-83
pubmed: 24304967
PLoS One. 2019 Mar 18;14(3):e0213775
pubmed: 30883574
Science. 2011 Jun 10;332(6035):1327-30
pubmed: 21659606
Am Nat. 2009 Dec;174(6):875-89
pubmed: 19860541
Nature. 2008 Dec 11;456(7223):792-4
pubmed: 18931656
R Soc Open Sci. 2019 May 22;6(5):181517
pubmed: 31218018
Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6548-6553
pubmed: 29891709
Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):E5963-E5969
pubmed: 29895695
J R Soc Interface. 2010 Feb 6;7(43):321-33
pubmed: 19605400
Sci Rep. 2019 Aug 1;9(1):11178
pubmed: 31371735
J Evol Biol. 2015 Apr;28(4):986-94
pubmed: 25808422
Ecology. 2011 Apr;92(4):859-70
pubmed: 21661549
Nature. 2008 May 8;453(7192):220-2
pubmed: 18464742
Proc Biol Sci. 2018 Dec 19;285(1893):20182441
pubmed: 30963914
Nature. 2000 Apr 13;404(6779):755-8
pubmed: 10783887
Ecol Lett. 2013 May;16(5):707-19
pubmed: 23458322
Mol Ecol. 2015 Sep;24(18):4586-604
pubmed: 26284462
Am Nat. 2013 Sep;182(3):328-46
pubmed: 23933724
Proc Natl Acad Sci U S A. 2016 Feb 16;113(7):1737-42
pubmed: 26831107
Ecol Lett. 2007 Feb;10(2):165-75
pubmed: 17257104
Ecol Evol. 2014 Apr;4(8):1243-54
pubmed: 24834323
Am Nat. 2014 Jan;183(1):13-25
pubmed: 24334732
Theor Popul Biol. 2006 Feb;69(1):88-93
pubmed: 16242743
Science. 1934 Jan 5;79(2036):16-7
pubmed: 17821472
Proc Natl Acad Sci U S A. 2012 Apr 10;109(15):5761-6
pubmed: 22460788
Ecol Lett. 2014 Apr;17(4):426-34
pubmed: 24460729
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Feb;53(2):1510-1515
pubmed: 9964414
Ecol Lett. 2005 May;8(5):548-57
pubmed: 21352459
Phys Rev Lett. 2000 May 15;84(20):4745-8
pubmed: 10990786
J Theor Biol. 2019 Feb 7;462:418-424
pubmed: 30496747
J Anim Ecol. 2010 May;79(3):571-80
pubmed: 20180874
Nature. 2010 Sep 30;467(7315):555-61
pubmed: 20882010