Genome-Wide SNP Analysis Reveals the Population Structure and the Conservation Status of 23 Italian Chicken Breeds.
biodiversity
genetic diversity
local breeds
poultry
safeguard
Journal
Animals : an open access journal from MDPI
ISSN: 2076-2615
Titre abrégé: Animals (Basel)
Pays: Switzerland
ID NLM: 101635614
Informations de publication
Date de publication:
18 Aug 2020
18 Aug 2020
Historique:
received:
10
07
2020
revised:
14
08
2020
accepted:
15
08
2020
entrez:
23
8
2020
pubmed:
23
8
2020
medline:
23
8
2020
Statut:
epublish
Résumé
The genomic variability of local Italian chicken breeds, which were monitored under a conservation plan, was studied using single nucleotide polymorphisms (SNPs) to understand their genetic diversity and population structure. A total of 582 samples from 23 local breeds and four commercial stocks were genotyped using the Affymetrix 600 K Chicken SNP Array. In general, the levels of genetic diversity, investigated through different approaches, were lowest in the local chicken breeds compared to those in the commercial stocks. The level of genomic inbreeding, based on runs of homozygosity (F
Identifiants
pubmed: 32824706
pii: ani10081441
doi: 10.3390/ani10081441
pmc: PMC7460279
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Ministero delle Politiche Agricole Alimentari e Forestali
ID : Protection of biodiversity of Italian poultry breeds" - TuBaVi - 2014 - 2020. PSRN
Références
Animal. 2018 Dec;12(12):2480-2488
pubmed: 29576040
Mech Dev. 2004 Sep;121(9):1169-77
pubmed: 15296980
Mol Genet Genomics. 2015 Oct;290(5):1673-82
pubmed: 25782841
Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17312-7
pubmed: 18981413
Animal. 2017 May;11(5):737-745
pubmed: 27819220
Heredity (Edinb). 2018 Dec;121(6):564-578
pubmed: 29588508
BMC Genomics. 2019 May 7;20(1):345
pubmed: 31064348
Poult Sci. 2010 Mar;89(3):420-7
pubmed: 20181856
Front Genet. 2018 Oct 10;9:438
pubmed: 30364216
Anim Genet. 2018 Feb;49(1):71-81
pubmed: 29333609
BMC Genomics. 2011 Sep 23;12:460
pubmed: 21943305
PLoS Genet. 2012;8(11):e1003100
pubmed: 23209444
Anim Genet. 2006 Apr;37(2):101-5
pubmed: 16573523
PLoS One. 2012;7(2):e32720
pubmed: 22384281
Gigascience. 2015 Feb 25;4:7
pubmed: 25722852
Mol Biol Evol. 2006 Feb;23(2):254-67
pubmed: 16221896
Bioinformatics. 2019 Feb 1;35(3):526-528
pubmed: 30016406
Animals (Basel). 2020 Mar 15;10(3):
pubmed: 32183495
G3 (Bethesda). 2017 Jan 5;7(1):109-117
pubmed: 27852011
Endocrinology. 2014 Aug;155(8):2787-96
pubmed: 24823391
BMC Bioinformatics. 2011 Jun 18;12:246
pubmed: 21682921
Front Genet. 2019 Jan 14;9:737
pubmed: 30693019
Anim Genet. 2014 Apr;45(2):256-66
pubmed: 24303943
BMC Genomics. 2011 Jun 16;12:318
pubmed: 21679429
Genet Sel Evol. 2015 Aug 04;47:62
pubmed: 26239391
Br Poult Sci. 2016 Aug;57(4):435-43
pubmed: 27159279
Genet Sel Evol. 2016 Jul 25;48(1):52
pubmed: 27455838
Anim Genet. 2008 Aug;39(4):407-24
pubmed: 18544075