Charge density of 4-methyl-3-[(tetrahydro-2H-pyran-2-yl)oxy]thiazole-2(3H)-thione. A comprehensive multipole refinement, maximum entropy method and density functional theory study.
N,O-bond order
O-alkyl thiohydroxamate
charge density
homolytic cleavage
hydroxylamine derivative
maximum entropy method
multipole model
quantum crystallography
quantum information crystallography
Journal
Acta crystallographica Section B, Structural science, crystal engineering and materials
ISSN: 2052-5206
Titre abrégé: Acta Crystallogr B Struct Sci Cryst Eng Mater
Pays: England
ID NLM: 101609037
Informations de publication
Date de publication:
01 Jun 2020
01 Jun 2020
Historique:
received:
03
07
2019
accepted:
20
04
2020
entrez:
25
8
2020
pubmed:
25
8
2020
medline:
25
8
2020
Statut:
ppublish
Résumé
The structure of 4-methyl-3-[(tetrahydro-2H-pyran-2-yl)oxy]thiazole-2(3H)-thione (MTTOTHP) was investigated using X-ray diffraction and computational chemistry methods for determining properties of the nitrogen-oxygen bond, which is the least stable entity upon photochemical excitation. Experimentally measured structure factors have been used to determine and characterize charge density via the multipole model (MM) and the maximum entropy method (MEM). Theoretical investigation of the electron density and the electronic structure has been performed in the finite basis set density functional theory (DFT) framework. Quantum Theory of Atoms In Molecules (QTAIM), deformation densities and Laplacians maps have been used to compare theoretical and experimental results. MM experimental results and predictions from theory differ with respect to the sign and/or magnitude of the Laplacian at the N-O bond critical point (BCP), depending on the treatment of n values of the MM radial functions. Such Laplacian differences in the N-O bond case are discussed with respect to a lack of flexibility in the MM radial functions also reported by Rykounov et al. [Acta Cryst. (2011), B67, 425-436]. BCP Hessian eigenvalues show qualitatively matching results between MM and DFT. In addition, the theoretical analysis used domain-averaged fermi holes (DAFH), natural bond orbital (NBO) analysis and localized (LOC) orbitals to characterize the N-O bond as a single σ bond with marginal π character. Hirshfeld atom refinement (HAR) has been employed to compare to the MM refinement results and/or neutron dataset C-H bond lengths and to crystal or single molecule geometry optimizations, including considerations of anisotropy of H atoms. Our findings help to understand properties of molecules like MTTOTHP as progenitors of free oxygen radicals.
Identifiants
pubmed: 32831263
pii: S2052520620005533
doi: 10.1107/S2052520620005533
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
450-468Subventions
Organisme : Agentúra na Podporu Výskumu a Vývoja
ID : APVV-15-0053
Organisme : Agentúra na Podporu Výskumu a Vývoja
ID : APVV-15-0079
Organisme : Agentúra Ministerstva Školstva, Vedy, Výskumu a Športu SR
ID : 1/0598/16
Organisme : Agentúra Ministerstva Školstva, Vedy, Výskumu a Športu SR
ID : 1/0466/18
Organisme : Agentúra Ministerstva Školstva, Vedy, Výskumu a Športu SR
ID : No. 1/0718/19
Organisme : HPC center at the Slovak University of Technology in Bratislava
ID : SIVVP project, ITMS code 26230120002
Organisme : Ministerstvo školstva, vedy, výskumu a športu Slovenskej republiky
ID : Excellent research teams
Organisme : Grantová Agentura České Republiky
ID : No. 18- 10504S