Charge density of 4-methyl-3-[(tetrahydro-2H-pyran-2-yl)oxy]thiazole-2(3H)-thione. A comprehensive multipole refinement, maximum entropy method and density functional theory study.

N,O-bond order O-alkyl thiohydroxamate charge density homolytic cleavage hydroxylamine derivative maximum entropy method multipole model quantum crystallography quantum information crystallography

Journal

Acta crystallographica Section B, Structural science, crystal engineering and materials
ISSN: 2052-5206
Titre abrégé: Acta Crystallogr B Struct Sci Cryst Eng Mater
Pays: England
ID NLM: 101609037

Informations de publication

Date de publication:
01 Jun 2020
Historique:
received: 03 07 2019
accepted: 20 04 2020
entrez: 25 8 2020
pubmed: 25 8 2020
medline: 25 8 2020
Statut: ppublish

Résumé

The structure of 4-methyl-3-[(tetrahydro-2H-pyran-2-yl)oxy]thiazole-2(3H)-thione (MTTOTHP) was investigated using X-ray diffraction and computational chemistry methods for determining properties of the nitrogen-oxygen bond, which is the least stable entity upon photochemical excitation. Experimentally measured structure factors have been used to determine and characterize charge density via the multipole model (MM) and the maximum entropy method (MEM). Theoretical investigation of the electron density and the electronic structure has been performed in the finite basis set density functional theory (DFT) framework. Quantum Theory of Atoms In Molecules (QTAIM), deformation densities and Laplacians maps have been used to compare theoretical and experimental results. MM experimental results and predictions from theory differ with respect to the sign and/or magnitude of the Laplacian at the N-O bond critical point (BCP), depending on the treatment of n values of the MM radial functions. Such Laplacian differences in the N-O bond case are discussed with respect to a lack of flexibility in the MM radial functions also reported by Rykounov et al. [Acta Cryst. (2011), B67, 425-436]. BCP Hessian eigenvalues show qualitatively matching results between MM and DFT. In addition, the theoretical analysis used domain-averaged fermi holes (DAFH), natural bond orbital (NBO) analysis and localized (LOC) orbitals to characterize the N-O bond as a single σ bond with marginal π character. Hirshfeld atom refinement (HAR) has been employed to compare to the MM refinement results and/or neutron dataset C-H bond lengths and to crystal or single molecule geometry optimizations, including considerations of anisotropy of H atoms. Our findings help to understand properties of molecules like MTTOTHP as progenitors of free oxygen radicals.

Identifiants

pubmed: 32831263
pii: S2052520620005533
doi: 10.1107/S2052520620005533
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

450-468

Subventions

Organisme : Agentúra na Podporu Výskumu a Vývoja
ID : APVV-15-0053
Organisme : Agentúra na Podporu Výskumu a Vývoja
ID : APVV-15-0079
Organisme : Agentúra Ministerstva Školstva, Vedy, Výskumu a Športu SR
ID : 1/0598/16
Organisme : Agentúra Ministerstva Školstva, Vedy, Výskumu a Športu SR
ID : 1/0466/18
Organisme : Agentúra Ministerstva Školstva, Vedy, Výskumu a Športu SR
ID : No. 1/0718/19
Organisme : HPC center at the Slovak University of Technology in Bratislava
ID : SIVVP project, ITMS code 26230120002
Organisme : Ministerstvo školstva, vedy, výskumu a športu Slovenskej republiky
ID : Excellent research teams
Organisme : Grantová Agentura České Republiky
ID : No. 18- 10504S

Auteurs

Barbora Vénosová (B)

Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak Technical University of Technology in Bratislava, Radlinského 9, Bratislava, SK-81237, Slovak Republic.

Julia Koziskova (J)

Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak Technical University of Technology in Bratislava, Radlinského 9, Bratislava, SK-81237, Slovak Republic.

Jozef Kožíšek (J)

Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak Technical University of Technology in Bratislava, Radlinského 9, Bratislava, SK-81237, Slovak Republic.

Peter Herich (P)

Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak Technical University of Technology in Bratislava, Radlinského 9, Bratislava, SK-81237, Slovak Republic.

Karol Lušpai (K)

Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak Technical University of Technology in Bratislava, Radlinského 9, Bratislava, SK-81237, Slovak Republic.

Vaclav Petricek (V)

Institute of Physics, Czech Academy of Sciences, Na Slovance 1999/2, Praha 8, 182 21, Czech Republic.

Jens Hartung (J)

Fachbereich Chemie, Organische Chemie, Technische Universität Kaiserslautern, Erwin-Schrödinger-Straße, Kaiserslautern, D-67663, Germany.

Mike Müller (M)

Fachbereich Chemie, Organische Chemie, Technische Universität Kaiserslautern, Erwin-Schrödinger-Straße, Kaiserslautern, D-67663, Germany.

Christian B Hübschle (CB)

Laboratory of Crystallography, University of Bayreuth, Universitätsstrasse 30, Bayreuth, 95447, Germany.

Sander van Smaalen (S)

Laboratory of Crystallography, University of Bayreuth, Universitätsstrasse 30, Bayreuth, 95447, Germany.

Lukas Bucinsky (L)

Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak Technical University of Technology in Bratislava, Radlinského 9, Bratislava, SK-81237, Slovak Republic.

Classifications MeSH