Emerging priorities for microbial metagenome research.

Bioremediation Biotechnological application Environment Metagenome Xenobiotics

Journal

Bioresource technology reports
ISSN: 2589-014X
Titre abrégé: Bioresour Technol Rep
Pays: Netherlands
ID NLM: 101747079

Informations de publication

Date de publication:
Sep 2020
Historique:
received: 12 05 2020
revised: 23 06 2020
accepted: 24 06 2020
entrez: 25 8 2020
pubmed: 25 8 2020
medline: 25 8 2020
Statut: ppublish

Résumé

Overwhelming anthropogenic activities lead to deterioration of natural resources and the environment. The microorganisms are considered desirable, due to their suitability for easy genetic manipulation and handling. With the aid of modern biotechnological techniques, the culturable microorganisms have been widely exploited for the benefit of mankind. Metagenomics, a powerful tool to access the abundant biodiversity of the environmental samples including the unculturable microbes, to determine microbial diversity and population structure, their ecological roles and expose novel genes of interest. This review focuses on the microbial adaptations to the adverse environmental conditions, metagenomic techniques employed towards microbial biotechnology. Metagenomic approach helps to understand microbial ecology and to identify useful microbial derivatives like antibiotics, toxins, and enzymes with diverse and enhanced function. It also summarizes the application of metagenomics in clinical diagnosis, improving microbial ecology, therapeutics, xenobiotic degradation and impact on agricultural crops.

Identifiants

pubmed: 32835181
doi: 10.1016/j.biteb.2020.100485
pii: S2589-014X(20)30106-7
pii: 100485
pmc: PMC7319936
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

100485

Informations de copyright

© 2020 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

The authors declare that they have no conflict of interest and no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Références

Nature. 2012 Jun 13;486(7402):207-14
pubmed: 22699609
PLoS One. 2014 Jun 12;9(6):e99949
pubmed: 24923965
Microb Cell Fact. 2014 Jan 04;13:1
pubmed: 24387764
Chem Biol. 2005 Aug;12(8):895-904
pubmed: 16125101
Environ Int. 2019 Feb;123:567-579
pubmed: 30622081
FEMS Microbiol Lett. 2005 Jun 15;247(2):105-11
pubmed: 15936897
ISME J. 2014 Aug;8(8):1577-87
pubmed: 24553468
Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12353-E12362
pubmed: 30482864
Protein Expr Purif. 2006 Feb;45(2):315-23
pubmed: 16061395
FEMS Microbiol Lett. 2011 Aug;321(2):150-6
pubmed: 21631577
Plant Physiol Biochem. 2016 Feb;99:39-48
pubmed: 26713550
Int J Mol Sci. 2011 Jan 18;12(1):633-54
pubmed: 21340005
Ann Rev Mar Sci. 2011;3:347-71
pubmed: 21329209
Adv Appl Microbiol. 2009;66:141-251
pubmed: 19203651
J Mol Diagn. 2015 Nov;17(6):623-34
pubmed: 26433313
Biotechnol Lett. 2007 Mar;29(3):465-72
pubmed: 17203343
Front Microbiol. 2015 Jun 30;6:672
pubmed: 26175729
Appl Environ Microbiol. 2011 Feb;77(4):1315-24
pubmed: 21183646
J Biol Chem. 2002 Jul 19;277(29):26501-7
pubmed: 11994309
Biotechnol Adv. 2015 Dec;33(8):1845-54
pubmed: 26526541
Science. 2011 Jan 28;331(6016):463-7
pubmed: 21273488
PLoS One. 2014 Feb 26;9(2):e90087
pubmed: 24587220
Expert Rev Mol Diagn. 2016 Sep;16(9):1011-23
pubmed: 27453996
Genome Biol Evol. 2015 May 06;7(5):1216-26
pubmed: 25953766
Microb Cell Fact. 2011 May 29;10:41
pubmed: 21619698
Sci Data. 2019 Feb 12;6:190008
pubmed: 30747914
PLoS One. 2017 Dec 21;12(12):e0190178
pubmed: 29267397
Appl Environ Microbiol. 2010 Aug;76(16):5363-72
pubmed: 20562275
Environ Microbiome. 2020 Jan 13;15(1):1
pubmed: 33902731
PLoS One. 2014 Aug 21;9(8):e105515
pubmed: 25144665
PLoS One. 2016 Aug 02;11(8):e0160124
pubmed: 27482891
Ocul Surf. 2020 Jan;18(1):1-12
pubmed: 31669750
Bioengineered. 2019 Dec;10(1):469-492
pubmed: 31656120
World J Urol. 2020 Jan;38(1):35-43
pubmed: 30944967
J Anim Sci. 2010 Jul;88(7):2530-9
pubmed: 20228236
Appl Environ Microbiol. 2000 Jul;66(7):3113-6
pubmed: 10877816
Gastroenterology. 2000 Jan;118(1):36-47
pubmed: 10611152
AMB Express. 2019 Aug 5;9(1):124
pubmed: 31385056
Sci Total Environ. 2020 Mar 25;710:135906
pubmed: 31926407
J Biotechnol. 2007 Jul 15;130(4):370-7
pubmed: 17601620
Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10494-9
pubmed: 12097644
FEMS Microbiol Lett. 2013 Nov;348(1):1-10
pubmed: 23895412
Curr Opin Biotechnol. 2002 Dec;13(6):572-7
pubmed: 12482516
Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10234-6
pubmed: 12149517
Eur J Intern Med. 2018 Apr;50:28-32
pubmed: 29428498
Biomed Res Int. 2014;2014:503784
pubmed: 24696853
J Agric Food Chem. 2011 Apr 27;59(8):3812-8
pubmed: 21388130
Appl Environ Microbiol. 2013 Aug;79(15):4551-63
pubmed: 23686272
J Bacteriol. 1988 Feb;170(2):669-75
pubmed: 3123461
BMC Microbiol. 2010 Apr 27;10:129
pubmed: 20423490
FEMS Microbiol Ecol. 2014 Oct;90(1):195-205
pubmed: 25046442
J Microbiol Biotechnol. 2019 Jun 28;29(6):944-951
pubmed: 31091867
J Bacteriol. 1997 Feb;179(4):1280-90
pubmed: 9023213
ISME J. 2014 Jul;8(7):1464-75
pubmed: 24451203
Microbiologyopen. 2019 Apr;8(4):e00572
pubmed: 30851083
Appl Environ Microbiol. 1997 Nov;63(11):4516-22
pubmed: 9361437
Genome Med. 2016 Apr 20;8(1):42
pubmed: 27098727
Front Microbiol. 2018 Feb 20;9:147
pubmed: 29515526
Int J Environ Res Public Health. 2019 Mar 27;16(7):
pubmed: 30934749
Ecotoxicol Environ Saf. 2016 Dec;134P1:133-147
pubmed: 27611221
Bioengineered. 2020 Dec;11(1):356-374
pubmed: 32149573
Curr Opin Biotechnol. 2003 Jun;14(3):303-10
pubmed: 12849784
Microbiol Mol Biol Rev. 2004 Dec;68(4):686-91
pubmed: 15590780
Science. 2019 Mar 29;363(6434):
pubmed: 30923196
J Bacteriol. 1991 Oct;173(20):6515-27
pubmed: 1917876
Appl Environ Microbiol. 1991 Aug;57(8):2351-9
pubmed: 16348543
Microb Inform Exp. 2012 Feb 09;2(1):3
pubmed: 22587947
Nucleic Acids Res. 2006 Jan 10;34(1):e5
pubmed: 16407321
Cancer Sci. 2018 Mar;109(3):513-522
pubmed: 29345757
Front Microbiol. 2017 May 09;8:809
pubmed: 28536564
FEMS Microbiol Ecol. 2012 Aug;81(2):386-94
pubmed: 22428990
J Bacteriol. 1991 Oct;173(20):6528-36
pubmed: 1917877
PLoS One. 2015 Jun 22;10(6):e0129397
pubmed: 26098851
FEMS Microbiol Ecol. 2011 Oct;78(1):188-201
pubmed: 21395625
Antonie Van Leeuwenhoek. 2009 Nov;96(4):659-64
pubmed: 19777364
J Ind Microbiol Biotechnol. 2013 Feb;40(2):191-200
pubmed: 23160923
Nat Rev Microbiol. 2016 Apr;14(5):273-87
pubmed: 26972811
Nat Rev Genet. 2019 Jun;20(6):341-355
pubmed: 30918369
Appl Microbiol Biotechnol. 2013 Aug;97(15):6603-11
pubmed: 23801047
Chem Biol. 1998 Oct;5(10):R245-9
pubmed: 9818143
Sci Rep. 2019 Aug 1;9(1):11195
pubmed: 31371784
PLoS One. 2013 Dec 11;8(12):e81862
pubmed: 24349140
Appl Microbiol Biotechnol. 2007 Feb;74(1):113-24
pubmed: 17103163
PLoS One. 2015 Nov 04;10(11):e0135352
pubmed: 26536666
Genes (Basel). 2019 Jun 03;10(6):
pubmed: 31163637
Appl Microbiol Biotechnol. 2008 Sep;80(4):615-25
pubmed: 18600322
Appl Microbiol Biotechnol. 2010 Sep;88(1):155-65
pubmed: 20614217
Appl Microbiol Biotechnol. 2011 Aug;91(3):635-44
pubmed: 21494865
Microb Cell Fact. 2014 May 20;13:72
pubmed: 24886068
Genomics Proteomics Bioinformatics. 2018 Dec;16(6):405-415
pubmed: 30597257
Science. 2003 May 30;300(5624):1394-9
pubmed: 12730500
J Microbiol. 2009 Oct;47(5):542-8
pubmed: 19851726
Appl Environ Microbiol. 2003 Oct;69(10):6235-42
pubmed: 14532085
Springerplus. 2013 Aug 28;2:410
pubmed: 24024096
PLoS One. 2013 Nov 20;8(11):e79490
pubmed: 24278139
Microb Pathog. 2017 Apr;105:153-165
pubmed: 28192223
J Microbiol Methods. 2004 Aug;58(2):169-88
pubmed: 15234515
Genet Mol Res. 2010 Oct 19;9(4):2060-8
pubmed: 20967696
Nat Rev Microbiol. 2005 Jun;3(6):510-6
pubmed: 15931168
Bioresour Technol. 2012 Jan;103(1):322-8
pubmed: 22071242
Environ Microbiol. 2009 Jan;11(1):176-87
pubmed: 18771500
Cell. 2013 Jan 17;152(1-2):39-50
pubmed: 23332745
N Engl J Med. 2009 Feb 19;360(8):790-800
pubmed: 19228622
Front Microbiol. 2020 Jan 22;10:2986
pubmed: 32038514
Curr Opin Biotechnol. 2009 Jun;20(3):295-9
pubmed: 19502046
Appl Environ Microbiol. 2005 Feb;71(2):817-25
pubmed: 15691936
Environ Sci Pollut Res Int. 2019 Oct;26(28):29052-29064
pubmed: 31392612
Appl Environ Microbiol. 2006 May;72(5):3637-45
pubmed: 16672512
ISME J. 2007 Jun;1(2):134-48
pubmed: 18043623
Biomed Res Int. 2018 May 16;2018:1535209
pubmed: 29862253

Auteurs

Rangasamy Kirubakaran (R)

Department of Biotechnology, Vysya College, Salem, Tamil Nadu, India.

K N ArulJothi (KN)

Department of Genetic Engineering, SRM Institute of Science and Technology, Chennai, India.
Department of Human Biology, University of Cape Town, Cape Town, South Africa.

Sundaravadivel Revathi (S)

Department of Biochemistry, Vysya College, Salem, Tamil Nadu, India.

Nowsheen Shameem (N)

Department of Environmental Science, Cluster University Srinagar, J&K, India.

Javid A Parray (JA)

Department of Environmental Science, Govt SAM Degree College Budgam, J&K, India.

Classifications MeSH