Cooperative protein-solvent tuning of proton transfer energetics: carbonic anhydrase as a case study.


Journal

Physical chemistry chemical physics : PCCP
ISSN: 1463-9084
Titre abrégé: Phys Chem Chem Phys
Pays: England
ID NLM: 100888160

Informations de publication

Date de publication:
16 Sep 2020
Historique:
pubmed: 29 8 2020
medline: 9 2 2021
entrez: 29 8 2020
Statut: ppublish

Résumé

We investigate the coupling between the proton transfer (PT) energetics and the protein-solvent dynamics using the intra-molecular PT in wild type (wt) human carbonic anhydrase II and its ten-fold faster mutant Y7F/N67Q as a test case. We calculate the energy variation upon PT, and from that we also calculate the PT reaction free energy, making use of a hybrid quantum mechanics/molecular dynamics approach. In agreement with the experimental data, we obtain that the reaction free energy is basically the same in the two systems. Yet, we show that the instantaneous PT energy is on average lower in the mutant possibly contributing to the faster PT rate. Analysis of the contribution to the PT energetics of the solvent and of each protein residue, also not in the vicinity of the active site, provides evidence for electrostatic tuning of the PT energy arising from the combined effect of the solvent and the protein environment. These findings open up a way to the more general task of the rational design of mutants with either enhanced or reduced PT rate.

Identifiants

pubmed: 32857091
doi: 10.1039/d0cp03652h
doi:

Substances chimiques

Protons 0
Carbonic Anhydrase II EC 4.2.1.-
CA2 protein, human EC 4.2.1.1

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

19975-19981

Auteurs

Laura Zanetti-Polzi (L)

CNR Institute of Nanoscience, Via Campi 213/A, I-41125 Modena, Italy.

Massimiliano Aschi (M)

Department of Physical and Chemical Sciences, University of L'Aquila, Via Vetoio, I-67010 L'Aquila, Italy. isabella.daidone@univaq.it.

Isabella Daidone (I)

Department of Physical and Chemical Sciences, University of L'Aquila, Via Vetoio, I-67010 L'Aquila, Italy. isabella.daidone@univaq.it.

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Classifications MeSH