Semi-supervised Training Data Selection Improves Seizure Forecasting in Canines with Epilepsy.

Hierarchical clustering Machine learning Seizure forecasting

Journal

Biomedical signal processing and control
ISSN: 1746-8094
Titre abrégé: Biomed Signal Process Control
Pays: England
ID NLM: 101317299

Informations de publication

Date de publication:
Mar 2020
Historique:
entrez: 1 9 2020
pubmed: 31 8 2020
medline: 31 8 2020
Statut: ppublish

Résumé

Conventional selection of pre-ictal EEG epochs for seizure prediction algorithm training data typically assumes a continuous pre-ictal brain state preceding a seizure. This is carried out by defining a fixed duration, pre-ictal time period before seizures from which pre-ictal training data epochs are uniformly sampled. However, stochastic physiological and pathological fluctuations in EEG data characteristics and underlying brain states suggest that pre-ictal state dynamics may be more complex, and selection of pre-ictal training data segments to reflect this could improve algorithm performance. We propose a semi-supervised technique to select pre-ictal training data most distinguishable from interictal EEG according to pre-specified data characteristics. The proposed method uses hierarchical clustering to identify optimal pre-ictal data epochs. In this paper we compare the performance of a seizure forecasting algorithm with and without hierarchical clustering of pre-ictal periods in chronic iEEG recordings from six canines with naturally occurring epilepsy. Hierarchical clustering of training data improved results for Time In Warning (TIW) (0.18 vs. 0.23) and False Positive Rate (FPR) (0.5 vs. 0.59) when evaluated across all subjects (p<0.001, n=6). Results were mixed when evaluating TIW, FPR, and Sensitivity for individual dogs. Hierarchical clustering is a helpful method for training data selection overall, but should be evaluated on a subject-wise basis. The clustering method can be used to optimize results of forecasting towards sensitivity or TIW or FPR, and therefore can be useful for epilepsy management.

Identifiants

pubmed: 32863855
doi: 10.1016/j.bspc.2019.101743
pmc: PMC7450725
mid: NIHMS1543260
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : NINDS NIH HHS
ID : UH2 NS095495
Pays : United States
Organisme : NIA NIH HHS
ID : P50 AG016574
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS078136
Pays : United States
Organisme : NINDS NIH HHS
ID : UH3 NS095495
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS063039
Pays : United States
Organisme : NINDS NIH HHS
ID : R01 NS092882
Pays : United States

Déclaration de conflit d'intérêts

Declaration of interests The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

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Auteurs

Mona Nasseri (M)

Mayo Systems Electrophysiology Laboratory, Department of Neurology, Mayo Clinic, Rochester, MN, USA.

Vaclav Kremen (V)

Mayo Systems Electrophysiology Laboratory, Department of Neurology, Mayo Clinic, Rochester, MN, USA.
Czech Institute of Informatics, Robotics, and Cybernetics, Czech Technical University in Prague, Prague, Czech Republic.

Petr Nejedly (P)

Mayo Systems Electrophysiology Laboratory, Department of Neurology, Mayo Clinic, Rochester, MN, USA.

Inyong Kim (I)

Mayo Systems Electrophysiology Laboratory, Department of Neurology, Mayo Clinic, Rochester, MN, USA.

Su-Youne Chang (SY)

Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, USA.
Department of Neurologic Surgery, Mayo Clinic, Rochester, MN, USA.

Hang Joon Jo (H)

Mayo Systems Electrophysiology Laboratory, Department of Neurology, Mayo Clinic, Rochester, MN, USA.

Hari Guragain (H)

Mayo Systems Electrophysiology Laboratory, Department of Neurology, Mayo Clinic, Rochester, MN, USA.

Nathaniel Nelson (N)

Mayo Systems Electrophysiology Laboratory, Department of Neurology, Mayo Clinic, Rochester, MN, USA.

Edward Patterson (E)

Department of Veterinary Clinical Sciences, University of Minnesota College of Veterinary Medicine, St. Paul, MN, USA.

Beverly K Sturges (BK)

Veterinary Medical Teaching Hospital, University of California at Davis, Davis, CA 95616, USA.

Chelsea M Crowe (CM)

Veterinary Medical Teaching Hospital, University of California at Davis, Davis, CA 95616, USA.

Tim Denison (T)

Institute of Biomedical Engineering, University of Oxford, Oxford OX3 7DQ, UK.

Benjamin H Brinkmann (BH)

Mayo Systems Electrophysiology Laboratory, Department of Neurology, Mayo Clinic, Rochester, MN, USA.
Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, USA.

Gregory A Worrell (GA)

Mayo Systems Electrophysiology Laboratory, Department of Neurology, Mayo Clinic, Rochester, MN, USA.
Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, USA.

Classifications MeSH