Investigating population-scale allelic differential expression in wild populations of
Arctic seas
Tara Oceans
Zooplankton
allelic expression
copepod
metagenomics
metatranscriptomics
selection
structure
Journal
Ecology and evolution
ISSN: 2045-7758
Titre abrégé: Ecol Evol
Pays: England
ID NLM: 101566408
Informations de publication
Date de publication:
Aug 2020
Aug 2020
Historique:
received:
27
04
2020
revised:
04
06
2020
accepted:
10
06
2020
entrez:
5
9
2020
pubmed:
5
9
2020
medline:
5
9
2020
Statut:
epublish
Résumé
Acclimation allowed by variation in gene or allele expression in natural populations is increasingly understood as a decisive mechanism, as much as adaptation, for species evolution. However, for small eukaryotic organisms, as species from zooplankton, classical methods face numerous challenges. Here, we propose the concept of allelic differential expression at the population-scale (psADE) to investigate the variation in allele expression in natural populations. We developed a novel approach to detect psADE based on metagenomic and metatranscriptomic data from environmental samples. This approach was applied on the widespread marine copepod,
Identifiants
pubmed: 32884665
doi: 10.1002/ece3.6588
pii: ECE36588
pmc: PMC7452778
doi:
Types de publication
Journal Article
Langues
eng
Pagination
8894-8905Informations de copyright
© 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.
Déclaration de conflit d'intérêts
The authors declare no competing interests.
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