Genetically encoded live-cell sensor for tyrosinated microtubules.


Journal

The Journal of cell biology
ISSN: 1540-8140
Titre abrégé: J Cell Biol
Pays: United States
ID NLM: 0375356

Informations de publication

Date de publication:
05 10 2020
Historique:
received: 19 12 2019
revised: 16 04 2020
accepted: 21 07 2020
entrez: 5 9 2020
pubmed: 5 9 2020
medline: 25 3 2021
Statut: ppublish

Résumé

Microtubule cytoskeleton exists in various biochemical forms in different cells due to tubulin posttranslational modifications (PTMs). Tubulin PTMs are known to affect microtubule stability, dynamics, and interaction with MAPs and motors in a specific manner, widely known as tubulin code hypothesis. At present, there exists no tool that can specifically mark tubulin PTMs in living cells, thus severely limiting our understanding of their dynamics and cellular functions. Using a yeast display library, we identified a binder against terminal tyrosine of α-tubulin, a unique PTM site. Extensive characterization validates the robustness and nonperturbing nature of our binder as tyrosination sensor, a live-cell tubulin nanobody specific towards tyrosinated microtubules. Using this sensor, we followed nocodazole-, colchicine-, and vincristine-induced depolymerization events of tyrosinated microtubules in real time and found each distinctly perturbs the microtubule polymer. Together, our work describes a novel tyrosination sensor and its potential applications to study the dynamics of microtubule and their PTM processes in living cells.

Identifiants

pubmed: 32886100
pii: 152071
doi: 10.1083/jcb.201912107
pmc: PMC7659708
pii:
doi:

Substances chimiques

Microtubule-Associated Proteins 0
Tubulin 0
Tyrosine 42HK56048U
Vincristine 5J49Q6B70F
Nocodazole SH1WY3R615
Colchicine SML2Y3J35T

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : DBT-Wellcome Trust India Alliance
ID : IA/E/15/1/502339
Pays : India
Organisme : DBT-Wellcome Trust India Alliance
ID : IA/I/14/2/501533
Pays : India

Informations de copyright

© 2020 Kesarwani et al.

Références

J Cell Sci. 2020 Feb 13;133(3):
pubmed: 31932508
Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10346-51
pubmed: 17563362
Mol Cell. 2006 Sep 1;23(5):663-71
pubmed: 16949363
PLoS One. 2011;6(4):e18556
pubmed: 21602908
Nat Methods. 2014 Jul;11(7):731-3
pubmed: 24859753
J Cell Biol. 1967 Aug;34(2):525-33
pubmed: 6068183
J Biomol NMR. 2009 Feb;43(2):63-78
pubmed: 19034676
J Cell Sci. 1989 Jan;92 ( Pt 1):57-65
pubmed: 2674164
Cell. 1984 Oct;38(3):779-89
pubmed: 6386177
J Mol Biol. 2011 Jun 17;409(4):601-16
pubmed: 21515282
Bioinformatics. 2015 Apr 15;31(8):1325-7
pubmed: 25505092
Curr Opin Cell Biol. 2005 Feb;17(1):82-8
pubmed: 15661523
J Cell Biol. 2014 Nov 10;207(3):323-34
pubmed: 25385183
J Cell Sci. 1992 Jul;102 ( Pt 3):401-16
pubmed: 1506423
J Neurochem. 1973 Jan;20(1):97-108
pubmed: 4687210
Dev Cell. 2018 Oct 22;47(2):175-190.e5
pubmed: 30245156
Cell Res. 2019 Jul;29(7):533-547
pubmed: 31171830
FEBS Lett. 2013 Nov 1;587(21):3450-5
pubmed: 24021646
Mol Cell. 2007 May 11;26(3):437-48
pubmed: 17499049
Methods Enzymol. 2014;540:149-66
pubmed: 24630106
J Cell Biol. 2017 Sep 4;216(9):2701-2713
pubmed: 28687664
EMBO J. 2016 Jun 1;35(11):1175-85
pubmed: 26968983
Cell. 2018 May 31;173(6):1323-1327
pubmed: 29856952
Curr Cancer Drug Targets. 2007 Dec;7(8):730-42
pubmed: 18220533
Biochemistry. 1980 Dec 23;19(26):6209-15
pubmed: 7470461
PLoS One. 2013;8(3):e59812
pubmed: 23555790
J Cell Biol. 1993 Feb;120(3):725-32
pubmed: 8093886
Science. 1994 Dec 9;266(5191):1688-91
pubmed: 7992051
Cell. 2016 Feb 25;164(5):911-21
pubmed: 26875866
Mol Biol Cell. 2001 Apr;12(4):971-80
pubmed: 11294900
Front Immunol. 2017 Aug 24;8:1030
pubmed: 28883823
Nat Rev Mol Cell Biol. 2020 Jun;21(6):307-326
pubmed: 32107477
Methods Cell Biol. 2010;97:1-14
pubmed: 20719262
J Biomol NMR. 1995 Nov;6(3):277-93
pubmed: 8520220
Methods Mol Biol. 2020;2101:327-351
pubmed: 31879912
Neuron. 2017 Dec 20;96(6):1264-1271.e5
pubmed: 29198755
Mol Biol Cell. 1995 Sep;6(9):1215-29
pubmed: 8534917
J Cell Biol. 2014 Aug 18;206(4):461-72
pubmed: 25135932
Curr Opin Cell Biol. 2019 Oct;60:36-43
pubmed: 31108428
Mol Cell Biol. 2002 May;22(9):3089-102
pubmed: 11940666
J Cell Sci. 2002 Sep 1;115(Pt 17):3527-39
pubmed: 12154083
Cold Spring Harb Perspect Biol. 2017 Jun 1;9(6):
pubmed: 28003186
EMBO J. 2018 Dec 3;37(23):
pubmed: 30420556
Nat Protoc. 2019 May;14(5):1634-1660
pubmed: 30996262
Methods. 2015 Oct 15;88:3-10
pubmed: 26164701
Nat Commun. 2019 Jul 19;10(1):3212
pubmed: 31324789
J Cell Biol. 1982 Jun;93(3):576-82
pubmed: 6811596
Science. 2017 Dec 15;358(6369):1448-1453
pubmed: 29146868
Science. 2017 Dec 15;358(6369):1453-1456
pubmed: 29146869
Trends Cell Biol. 2018 Oct;28(10):776-792
pubmed: 29871823
J Cell Biol. 1988 Apr;106(4):1213-20
pubmed: 3283150
Nature. 2004 Mar 11;428(6979):198-202
pubmed: 15014504
J Cell Biol. 2015 Jun 8;209(5):633-44
pubmed: 26056137
Cell Rep. 2016 Mar 22;14(11):2637-52
pubmed: 26972003
Methods Cell Biol. 2010;97:15-33
pubmed: 20719263
Methods Cell Biol. 2013;115:247-67
pubmed: 23973077
Trends Biochem Sci. 2008 Nov;33(11):535-45
pubmed: 18835717
Science. 2015 May 15;348(6236):799-803
pubmed: 25908662
Nat Med. 2018 Aug;24(8):1225-1233
pubmed: 29892068
Nature. 2005 May 26;435(7041):519-22
pubmed: 15917812
J Cell Biol. 1987 Nov;105(5):2167-77
pubmed: 3316248
Essays Biochem. 2018 Dec 7;62(6):725-735
pubmed: 30287587
Biochemistry. 1985 Jan 15;24(2):473-8
pubmed: 3919761
Biochemistry. 1996 Aug 13;35(32):10256-61
pubmed: 8756680
J Biol Chem. 2001 Apr 20;276(16):12839-48
pubmed: 11278895
Science. 2016 Apr 22;352(6284):aaf0659
pubmed: 27102488
Science. 1990 Jan 5;247(4938):83-5
pubmed: 1967194
J Cell Biol. 2008 Dec 29;183(7):1223-33
pubmed: 19103809
Nat Commun. 2015 Aug 11;6:7933
pubmed: 26260773
J Cell Sci. 1996 Apr;109 ( Pt 4):727-38
pubmed: 8718664
J Cell Biol. 2006 Sep 11;174(6):839-49
pubmed: 16954346
Appl Environ Microbiol. 2012 Aug;78(15):5440-3
pubmed: 22610439
Science. 2015 Sep 11;349(6253):1232-6
pubmed: 26229115
J Cell Biol. 1987 Jul;105(1):265-76
pubmed: 3301867
J Cell Sci. 1994 Jun;107 ( Pt 6):1529-43
pubmed: 7962195
PLoS Biol. 2010 Nov 16;8(11):e1000542
pubmed: 21103410
Proc Natl Acad Sci U S A. 1987 Dec;84(24):9040-4
pubmed: 3321065
Eur J Biochem. 1975 Nov 1;59(1):145-9
pubmed: 1204603
J Cell Biol. 2010 Jun 14;189(6):945-54
pubmed: 20530212
Cell Struct Funct. 1999 Oct;24(5):313-20
pubmed: 15216888
PLoS One. 2012;7(11):e48928
pubmed: 23145025
Nat Cell Biol. 2014 Apr;16(4):335-44
pubmed: 24633327
J Biomol NMR. 2019 May;73(5):213-222
pubmed: 31165321

Auteurs

Shubham Kesarwani (S)

Centre for Cardiovascular Biology and Diseases, Institute for Stem Cell Science and Regenerative Medicine, Gandhi Krishi Vigyan Kendra Campus, Bangalore, India.
Manipal Academy of Higher Education, Manipal, Karnataka, India.

Prakash Lama (P)

Centre for Cardiovascular Biology and Diseases, Institute for Stem Cell Science and Regenerative Medicine, Gandhi Krishi Vigyan Kendra Campus, Bangalore, India.
Manipal Academy of Higher Education, Manipal, Karnataka, India.

Anchal Chandra (A)

National Center for Biological Sciences, Tata Institute of Fundamental Research, Gandhi Krishi Vigyan Kendra Campus, Bangalore, India.

P Purushotam Reddy (PP)

National Center for Biological Sciences, Tata Institute of Fundamental Research, Gandhi Krishi Vigyan Kendra Campus, Bangalore, India.

A S Jijumon (AS)

Institut Curie, Paris Sciences et Lettres University, Centre National de la Recherche Scientifique UMR3348, Orsay, France.
Université Paris Sud, Université Paris-Saclay, Centre National de la Recherche Scientifique UMR3348, Orsay, France.

Satish Bodakuntla (S)

Institut Curie, Paris Sciences et Lettres University, Centre National de la Recherche Scientifique UMR3348, Orsay, France.
Université Paris Sud, Université Paris-Saclay, Centre National de la Recherche Scientifique UMR3348, Orsay, France.

Balaji M Rao (BM)

Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC.

Carsten Janke (C)

Institut Curie, Paris Sciences et Lettres University, Centre National de la Recherche Scientifique UMR3348, Orsay, France.
Université Paris Sud, Université Paris-Saclay, Centre National de la Recherche Scientifique UMR3348, Orsay, France.

Ranabir Das (R)

National Center for Biological Sciences, Tata Institute of Fundamental Research, Gandhi Krishi Vigyan Kendra Campus, Bangalore, India.

Minhajuddin Sirajuddin (M)

Centre for Cardiovascular Biology and Diseases, Institute for Stem Cell Science and Regenerative Medicine, Gandhi Krishi Vigyan Kendra Campus, Bangalore, India.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH