Elimination of fast variables in stochastic nonlinear kinetics.


Journal

Physical chemistry chemical physics : PCCP
ISSN: 1463-9084
Titre abrégé: Phys Chem Chem Phys
Pays: England
ID NLM: 100888160

Informations de publication

Date de publication:
23 Sep 2020
Historique:
pubmed: 11 9 2020
medline: 11 9 2020
entrez: 10 9 2020
Statut: ppublish

Résumé

A reduced chemical scheme involving a small number of variables is often sufficient to account for the deterministic evolution of the concentration of the main species contributing to a reaction. However, its predictions are questionable in small systems used, for example in fluorescence correlation spectroscopy (FCS) or in explosive systems involving strong nonlinearities such as autocatalytic steps. We make precise dynamical criteria defining the validity domain of the quasi-steady-state approximation and the elimination of a fast concentration in deterministic dynamics. Designing two different three-variable models converging toward the same two-variable model, we show that the variances and covariance of the fluctuations of the slow variables are not correctly predicted using the two-variable model, even in the limit of a large system size. The more striking weaknesses of the reduced scheme are figured out in mesoscaled systems containing a small number of molecules. The results of two stochastic approaches are compared and the shortcomings of the Langevin equations with respect to the master equation are pointed out. We conclude that the description of the fluctuations and their coupling with nonlinearities of deterministic dynamics escape reduced chemical schemes.

Identifiants

pubmed: 32909563
doi: 10.1039/d0cp02785e
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

20801-20814

Auteurs

Gabriel Morgado (G)

Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland and Laboratoire de Physique Théorique de la Matière Condensée, Sorbonne Université, CNRS, 4 Place Jussieu, Case Courrier 121, 75252 Paris CEDEX 05, France. annie.lemarchand@sorbonne-universite.fr.

Bogdan Nowakowski (B)

Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland and SGGW, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.

Annie Lemarchand (A)

Laboratoire de Physique Théorique de la Matière Condensée, Sorbonne Université, CNRS, 4 Place Jussieu, Case Courrier 121, 75252 Paris CEDEX 05, France. annie.lemarchand@sorbonne-universite.fr.

Classifications MeSH