Revealing hidden medium-range order in amorphous materials using topological data analysis.


Journal

Science advances
ISSN: 2375-2548
Titre abrégé: Sci Adv
Pays: United States
ID NLM: 101653440

Informations de publication

Date de publication:
Sep 2020
Historique:
received: 13 04 2020
accepted: 22 07 2020
entrez: 12 9 2020
pubmed: 13 9 2020
medline: 13 9 2020
Statut: epublish

Résumé

Despite the numerous technological applications of amorphous materials, such as glasses, the understanding of their medium-range order (MRO) structure-and particularly the origin of the first sharp diffraction peak (FSDP) in the structure factor-remains elusive. Here, we use persistent homology, an emergent type of topological data analysis, to understand MRO structure in sodium silicate glasses. To enable this analysis, we introduce a self-consistent categorization of rings with rigorous geometrical definitions of the structural entities. Furthermore, we enable quantitative comparison of the persistence diagrams by computing the cumulative sum of all points weighted by their lifetime. On the basis of these analysis methods, we show that the approach can be used to deconvolute the contributions of various MRO features to the FSDP. More generally, the developed methodology can be applied to analyze and categorize molecular dynamics data and understand MRO structure in any class of amorphous solids.

Identifiants

pubmed: 32917687
pii: 6/37/eabc2320
doi: 10.1126/sciadv.abc2320
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY).

Auteurs

Søren S Sørensen (SS)

Department of Chemistry and Bioscience, Aalborg University, DK-9220 Aalborg, Denmark.

Christophe A N Biscio (CAN)

Department of Mathematical Sciences, Aalborg University, DK-9220 Aalborg, Denmark.

Mathieu Bauchy (M)

Physics of AmoRphous and Inorganic Solids Laboratory (PARISlab), Department of Civil and Environmental Engineering, University of California, Los Angeles, Los Angeles, CA 90095, USA.

Lisbeth Fajstrup (L)

Department of Mathematical Sciences, Aalborg University, DK-9220 Aalborg, Denmark.

Morten M Smedskjaer (MM)

Department of Chemistry and Bioscience, Aalborg University, DK-9220 Aalborg, Denmark. mos@bio.aau.dk.

Classifications MeSH