Dynamic Laser Speckle Imaging Meets Machine Learning to Enable Rapid Antibacterial Susceptibility Testing (DyRAST).

antibacterial susceptibility testing bacteria laser speckle imaging machine learning phenotype

Journal

ACS sensors
ISSN: 2379-3694
Titre abrégé: ACS Sens
Pays: United States
ID NLM: 101669031

Informations de publication

Date de publication:
23 10 2020
Historique:
pubmed: 19 9 2020
medline: 15 5 2021
entrez: 18 9 2020
Statut: ppublish

Résumé

Rapid antibacterial susceptibility testing (RAST) methods are of significant importance in healthcare, as they can assist caregivers in timely administration of the correct treatments. Various RAST techniques have been reported for tracking bacterial phenotypes, including size, shape, motion, and redox state. However, they still require bulky and expensive instruments-which hinder their application in resource-limited environments-and/or utilize labeling reagents which can interfere with antibiotics and add to the total cost. Furthermore, the existing RAST methods do not address the potential gradual adaptation of bacteria to antibiotics, which can lead to a false diagnosis. In this work, we present a RAST approach by leveraging machine learning to analyze time-resolved dynamic laser speckle imaging (DLSI) results. DLSI captures the change in bacterial motion in response to antibiotic treatments. Our method accurately predicts the minimum inhibitory concentration (MIC) of ampicillin and gentamicin for a model strain of

Identifiants

pubmed: 32942846
doi: 10.1021/acssensors.0c01238
doi:

Substances chimiques

Anti-Bacterial Agents 0

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

3140-3149

Auteurs

Keren Zhou (K)

School of Electrical Engineering and Computer Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.
Materials Research Institute, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Chen Zhou (C)

School of Electrical Engineering and Computer Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.
Materials Research Institute, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Anjali Sapre (A)

Department of Food Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Jared Henry Pavlock (JH)

Department of Food Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Ashley Weaver (A)

Department of Food Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Ritvik Muralidharan (R)

School of Electrical Engineering and Computer Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Josh Noble (J)

School of Electrical Engineering and Computer Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.
Materials Research Institute, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Taejung Chung (T)

Department of Food Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Jasna Kovac (J)

Department of Food Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Zhiwen Liu (Z)

School of Electrical Engineering and Computer Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.
Materials Research Institute, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

Aida Ebrahimi (A)

School of Electrical Engineering and Computer Science, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.
Materials Research Institute, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.
Department of Biomedical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

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