Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment.
ABC gene family
abiotic stress
barley
gene expression
Journal
Plants (Basel, Switzerland)
ISSN: 2223-7747
Titre abrégé: Plants (Basel)
Pays: Switzerland
ID NLM: 101596181
Informations de publication
Date de publication:
28 Sep 2020
28 Sep 2020
Historique:
received:
22
08
2020
revised:
25
09
2020
accepted:
27
09
2020
entrez:
1
10
2020
pubmed:
2
10
2020
medline:
2
10
2020
Statut:
epublish
Résumé
Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA-ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley.
Identifiants
pubmed: 32998428
pii: plants9101281
doi: 10.3390/plants9101281
pmc: PMC7599588
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : the National Natural Science Foundation of China
ID : 31401316
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