Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps.

Animals Internet Salamandridae Signal Transduction Software Systems Biology

Journal

Bioinformatics (Oxford, England)
ISSN: 1367-4811
Titre abrégé: Bioinformatics
Pays: England
ID NLM: 9808944

Informations de publication

Date de publication:
16 06 2021
Historique:
received: 03 06 2020
revised: 25 08 2020
accepted: 18 09 2020
pubmed: 4 10 2020
medline: 1 7 2021
entrez: 3 10 2020
Statut: ppublish

Résumé

Visualization of cellular processes and pathways is a key recurring requirement for effective biological data analysis. There is a considerable need for sophisticated web-based pathway viewers and editors operating with widely accepted standard formats, using the latest visualization techniques and libraries. We developed a web-based tool named Newt for viewing, constructing and analyzing biological maps in standard formats such as SBGN, SBML and SIF. Newt's source code is publicly available on GitHub and freely distributed under the GNU LGPL. Ample documentation on Newt can be found on http://newteditor.org and on YouTube.

Identifiants

DOI: 10.1093/bioinformatics/btaa850 PMID: 33010165
pubmed: 33010165
pii: 5917629
doi: 10.1093/bioinformatics/btaa850
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

1475-1477

Informations de copyright

© The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Auteurs

Hasan Balci (H)

i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara 06800, Turkey.

Metin Can Siper (MC)

i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara 06800, Turkey.
Molecular & Medical Genetics Department, School of Medicine, Oregon Health & Science University, Portland, OR 97239, USA.

Nasim Saleh (N)

i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara 06800, Turkey.

Ilkin Safarli (I)

i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara 06800, Turkey.
Visualization Design Lab, School of Computing, University of Utah, Salt Lake City, UT 84112, USA.

Ludovic Roy (L)

European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Université de Lyon, 69007 Lyon, France.

Merve Kilicarslan (M)

i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara 06800, Turkey.

Rumeysa Ozaydin (R)

i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara 06800, Turkey.

Alexander Mazein (A)

European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Université de Lyon, 69007 Lyon, France.
Luxembourg Centre for Systems Biomedicine, University of Luxembourg, L-4367 Belvaux, Luxembourg.
ORCID: 0000-0001-7137-4171

Charles Auffray (C)

European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Université de Lyon, 69007 Lyon, France.

Özgün Babur (Ö)

Molecular & Medical Genetics Department, School of Medicine, Oregon Health & Science University, Portland, OR 97239, USA.
Computer Science Department, University of Massachusetts Boston, Boston, MA 02125, USA.

Emek Demir (E)

Molecular & Medical Genetics Department, School of Medicine, Oregon Health & Science University, Portland, OR 97239, USA.

Ugur Dogrusoz (U)

i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara 06800, Turkey.
ORCID: 0000-0002-7153-0784

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Newt: a comprehensive web-based tool for...
questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Systèmes informatiques › Réseaux de communication entre ordinateurs › Internet › Newt: a comprehensive web-based tool for...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Amphibiens › Urodela › Salamandridae › Newt: a comprehensive web-based tool for...
questionsmedicales.fr › Phénomènes physiologiques cellulaires › Transduction du signal › Newt: a comprehensive web-based tool for...
questionsmedicales.fr › Sciences de l'information › Méthodologies informatiques › Logiciel › Newt: a comprehensive web-based tool for...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Biologie des systèmes › Newt: a comprehensive web-based tool for...