Semi-supervised deep learning based 3D analysis of the peripapillary region.


Journal

Biomedical optics express
ISSN: 2156-7085
Titre abrégé: Biomed Opt Express
Pays: United States
ID NLM: 101540630

Informations de publication

Date de publication:
01 Jul 2020
Historique:
received: 18 03 2020
revised: 30 04 2020
accepted: 01 05 2020
entrez: 5 10 2020
pubmed: 6 10 2020
medline: 6 10 2020
Statut: epublish

Résumé

Optical coherence tomography (OCT) has become an essential tool in the evaluation of glaucoma, typically through analyzing retinal nerve fiber layer changes in circumpapillary scans. Three-dimensional OCT volumes enable a much more thorough analysis of the optic nerve head (ONH) region, which may be the site of initial glaucomatous optic nerve damage. Automated analysis of this region is of great interest, though large anatomical variations and the termination of layers make the requisite peripapillary layer and Bruch's membrane opening (BMO) segmentation a challenging task. Several machine learning-based segmentation methods have been proposed for retinal layer segmentation, and a few for the ONH region, but they typically depend on either heavily averaged or pre-processed B-scans or a large amount of annotated data, which is a tedious task and resource-intensive. We evaluated a semi-supervised adversarial deep learning method for segmenting peripapillary retinal layers in OCT B-scans to take advantage of unlabeled data. We show that the use of a generative adversarial network and unlabeled data can improve the performance of segmentation. Additionally, we use a Faster R-CNN architecture to automatically segment the BMO. The proposed methods are then used for the 3D morphometric analysis of both control and glaucomatous ONH volumes to demonstrate the potential for clinical utility.

Identifiants

pubmed: 33014570
doi: 10.1364/BOE.392648
pii: 392648
pmc: PMC7510893
doi:

Types de publication

Journal Article

Langues

eng

Pagination

3843-3856

Informations de copyright

© 2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Déclaration de conflit d'intérêts

MVS: Seymour Vision, Inc. (I).

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Auteurs

Morgan Heisler (M)

Simon Fraser University, Department of Engineering Science, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.

Mahadev Bhalla (M)

University of British Columbia, Faculty of Medicine, 317-2194 Health Sciences Mall, Vancouver, BC, V6 T 1Z3, Canada.

Julian Lo (J)

Simon Fraser University, Department of Engineering Science, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.

Zaid Mammo (Z)

University of British Columbia, Department of Ophthalmology and Vision Science, 2550 Willow Street, Vancouver, BC, V5Z 3N9, Canada.

Sieun Lee (S)

Simon Fraser University, Department of Engineering Science, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.

Myeong Jin Ju (MJ)

University of British Columbia, Department of Ophthalmology and Vision Science, 2550 Willow Street, Vancouver, BC, V5Z 3N9, Canada.
University of British Columbia, School of Biomedical Engineering, 251-2222 Health Sciences Mall, Vancouver, BC, V6 T 1Z3, Canada.

Mirza Faisal Beg (MF)

Simon Fraser University, Department of Engineering Science, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.

Marinko V Sarunic (MV)

Simon Fraser University, Department of Engineering Science, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.

Classifications MeSH