Lineage-Specific Proteomic Signatures in the

DNA repair ESX-3 secretion system Ethiopia Mycobacterium tuberculosis lineage 7 proteomics virulence

Journal

Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977

Informations de publication

Date de publication:
2020
Historique:
received: 16 04 2020
accepted: 17 08 2020
entrez: 19 10 2020
pubmed: 20 10 2020
medline: 20 10 2020
Statut: epublish

Résumé

Despite the discovery of the tubercle bacillus more than 130 years ago, its physiology and the mechanisms of virulence are still not fully understood. A comprehensive analysis of the proteomes of members of the human-adapted

Identifiants

pubmed: 33072011
doi: 10.3389/fmicb.2020.550760
pmc: PMC7536270
doi:

Types de publication

Journal Article

Langues

eng

Pagination

550760

Informations de copyright

Copyright © 2020 Yimer, Kalayou, Homberset, Birhanu, Riaz, Zegeye, Lutter, Abebe, Holm-Hansen, Aseffa and Tønjum.

Références

Mol Microbiol. 2005 Mar;55(6):1829-40
pubmed: 15752203
Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15
pubmed: 23203871
Electrophoresis. 2012 Aug;33(16):2516-26
pubmed: 22899259
J Proteome Res. 2017 Nov 3;16(11):4045-4059
pubmed: 28920697
Philos Trans R Soc Lond B Biol Sci. 2016 Nov 5;371(1707):
pubmed: 27672148
J Biol Chem. 2008 Jul 11;283(28):19329-41
pubmed: 18490451
Nat Methods. 2007 Mar;4(3):207-14
pubmed: 17327847
FEMS Microbiol Rev. 2017 May 1;41(3):354-373
pubmed: 28369307
Mol Microbiol. 2005 Sep;57(6):1653-63
pubmed: 16135231
Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):5157-62
pubmed: 17360388
PLoS One. 2014 Jul 07;9(7):e100949
pubmed: 25000291
Sci Rep. 2016 Jun 30;6:28985
pubmed: 27356881
mBio. 2014 May 06;5(3):e01073-14
pubmed: 24803520
J Mol Biol. 2006 Sep 1;361(5):850-63
pubmed: 16884737
PLoS Pathog. 2013 Oct;9(10):e1003734
pubmed: 24204276
PLoS One. 2016 Aug 04;11(8):e0160723
pubmed: 27490491
Mol Cell Proteomics. 2011 Dec;10(12):M111.011627
pubmed: 21969609
Cell Host Microbe. 2015 Jul 8;18(1):96-108
pubmed: 26094805
PLoS Negl Trop Dis. 2016 May 18;10(5):e0004701
pubmed: 27192147
APMIS. 2013 Sep;121(9):878-85
pubmed: 23336257
PLoS Pathog. 2011 Mar;7(3):e1001307
pubmed: 21408618
Front Microbiol. 2016 Oct 21;7:1654
pubmed: 27818650
Cell Microbiol. 2012 Aug;14(8):1287-98
pubmed: 22524898
Clin Exp Immunol. 2005 Jun;140(3):443-9
pubmed: 15932505
Tuberculosis (Edinb). 2011 Jan;91(1):8-13
pubmed: 20980200
BMC Bioinformatics. 2015 May 22;16:169
pubmed: 25994840
Biochim Biophys Acta. 2014 Aug;1843(8):1707-16
pubmed: 24263244
Chem Biol. 2014 Jan 16;21(1):67-85
pubmed: 24374164
Mol Microbiol. 2014 Jan;91(1):98-109
pubmed: 24205844
J Biol Chem. 2005 Apr 15;280(15):14524-9
pubmed: 15703182
Nat Commun. 2020 Jun 9;11(1):2917
pubmed: 32518235
Semin Immunol. 2014 Dec;26(6):431-44
pubmed: 25453224
Genome Biol Evol. 2014 Oct 01;6(10):2830-48
pubmed: 25274566
Proc Natl Acad Sci U S A. 2005 Jul 26;102(30):10676-81
pubmed: 16030141
Sci Rep. 2016 Mar 16;6:23089
pubmed: 26980157
J Cell Physiol. 2013 Jul;228(7):1413-22
pubmed: 23255141
Int J Mycobacteriol. 2013 Dec;2(4):220-6
pubmed: 26786126
Front Microbiol. 2017 May 09;8:795
pubmed: 28536560
Nat Biotechnol. 2008 Dec;26(12):1367-72
pubmed: 19029910
Microbiology (Reading). 2002 Oct;148(Pt 10):3139-3144
pubmed: 12368447
Microbiol Mol Biol Rev. 2008 Sep;72(3):471-94
pubmed: 18772286
FEMS Microbiol Rev. 2009 May;33(3):471-87
pubmed: 19385996
Microbiology (Reading). 2009 Nov;155(Pt 11):3532-3543
pubmed: 19661177
Nat Immunol. 2007 Jun;8(6):610-8
pubmed: 17486091
J Proteome Res. 2011 Apr 1;10(4):1794-805
pubmed: 21254760
BMC Microbiol. 2016 Jul 28;16(1):167
pubmed: 27464737
J Biol Chem. 1997 Jul 4;272(27):16741-5
pubmed: 9201977
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
PLoS Pathog. 2011 Oct;7(10):e1002287
pubmed: 21998585
Tuberculosis (Edinb). 2016 Jul;99:109-19
pubmed: 27450012
J Antimicrob Chemother. 2011 Jul;66(7):1417-30
pubmed: 21558086
PLoS Pathog. 2012 Feb;8(2):e1002507
pubmed: 22319448
Nat Commun. 2020 Feb 4;11(1):684
pubmed: 32019932
Curr Opin Microbiol. 2017 Oct;39:64-72
pubmed: 29032348
Microbiol Spectr. 2014 Jun;2(3):
pubmed: 25346874
BMC Evol Biol. 2016 Jun 30;16(1):146
pubmed: 27363525
Nucleic Acids Res. 2019 Jan 8;47(D1):D442-D450
pubmed: 30395289
Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5730-5
pubmed: 21427227
J Bacteriol. 1999 Aug;181(15):4443-51
pubmed: 10419938
Pathogens. 2018 Feb 23;7(1):
pubmed: 29473841
Emerg Infect Dis. 2013 Mar;19(3):460-3
pubmed: 23622814
Infect Immun. 2005 Mar;73(3):1898-902
pubmed: 15731097
Science. 1993 Sep 10;261(5127):1454-7
pubmed: 8367727
J Bacteriol. 2014 Jan;196(2):310-7
pubmed: 24187086
Virulence. 2013 Jan 1;4(1):3-66
pubmed: 23076359
BMC Infect Dis. 2013 Mar 11;13:131
pubmed: 23496968
J Biol Chem. 2016 Jul 1;291(27):14257-73
pubmed: 27151218
PLoS Pathog. 2015 Feb 06;11(2):e1004645
pubmed: 25658098
Mol Ecol. 2019 Jul;28(13):3241-3256
pubmed: 31066139
J Biol Chem. 2013 Nov 22;288(47):34190-204
pubmed: 24108128
Infect Immun. 2009 Mar;77(3):1230-7
pubmed: 19103767
PLoS One. 2013;8(3):e58954
pubmed: 23536839
Cell Microbiol. 2008 Feb;10(2):365-74
pubmed: 17892498
PLoS One. 2009;4(4):e5150
pubmed: 19340292
Biomed Res Int. 2019 Apr 2;2019:7861695
pubmed: 31061828
Nat Protoc. 2006;1(6):2856-60
pubmed: 17406544
J Clin Microbiol. 2015 Apr;53(4):1301-9
pubmed: 25673798
FEMS Microbiol Lett. 2014 Nov;360(2):87-99
pubmed: 25227413
Mol Cell Proteomics. 2014 Sep;13(9):2513-26
pubmed: 24942700
Chem Biol. 2003 Dec;10(12):1195-204
pubmed: 14700627
Mol Cell. 2019 Jan 17;73(2):278-290.e4
pubmed: 30503774
BMC Bioinformatics. 2003 Jan 13;4:2
pubmed: 12525261
Nat Methods. 2016 Sep;13(9):731-40
pubmed: 27348712
Mol Microbiol. 2004 Jan;51(2):359-70
pubmed: 14756778
Appl Environ Microbiol. 2008 Aug;74(16):5078-85
pubmed: 18552191
Anal Chem. 2003 Feb 1;75(3):663-70
pubmed: 12585499
Antimicrob Agents Chemother. 2012 Jun;56(6):3047-53
pubmed: 22470121
J Cell Biol. 2010 May 17;189(4):739-54
pubmed: 20479470
Cell. 2007 Jun 29;129(7):1287-98
pubmed: 17604718
J Biol Chem. 2013 Sep 27;288(39):27888-97
pubmed: 23935102
J Bacteriol. 2005 Nov;187(21):7309-16
pubmed: 16237013
Mol Cell. 2014 Apr 24;54(2):234-44
pubmed: 24766887
Mol Microbiol. 2014 Oct;94(2):242-53
pubmed: 25130693

Auteurs

Solomon Abebe Yimer (SA)

Unit for Genome Dynamics, Department of Microbiology, University of Oslo, Oslo, Norway.
Coalition for Epidemic Preparedness Innovations, Oslo, Norway.

Shewit Kalayou (S)

Division of Laboratory Medicine, Department of Microbiology, Oslo University Hospital, Oslo, Norway.
International Centre of Insect Physiology and Ecology, Nairobi, Kenya.

Håvard Homberset (H)

Unit for Genome Dynamics, Department of Microbiology, University of Oslo, Oslo, Norway.

Alemayehu Godana Birhanu (AG)

Unit for Genome Dynamics, Department of Microbiology, University of Oslo, Oslo, Norway.
Division of Laboratory Medicine, Department of Microbiology, Oslo University Hospital, Oslo, Norway.
Institute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia.

Tahira Riaz (T)

Unit for Genome Dynamics, Department of Microbiology, University of Oslo, Oslo, Norway.

Ephrem Debebe Zegeye (ED)

NORCE Norwegian Research Centre AS, Centre for Applied Biotechnology, Bergen, Norway.

Timo Lutter (T)

Unit for Genome Dynamics, Department of Microbiology, University of Oslo, Oslo, Norway.

Markos Abebe (M)

Armauer Hansen Research Institute, Addis Ababa, Ethiopia.

Carol Holm-Hansen (C)

Division of Infection Control and Environmental Health, Norwegian Institute of Public Health, Oslo, Norway.

Abraham Aseffa (A)

Armauer Hansen Research Institute, Addis Ababa, Ethiopia.

Tone Tønjum (T)

Unit for Genome Dynamics, Department of Microbiology, University of Oslo, Oslo, Norway.
Division of Laboratory Medicine, Department of Microbiology, Oslo University Hospital, Oslo, Norway.

Classifications MeSH