Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney.

glomerulus kidney mass spectrometry proteomics single cell analysis

Journal

Frontiers in medicine
ISSN: 2296-858X
Titre abrégé: Front Med (Lausanne)
Pays: Switzerland
ID NLM: 101648047

Informations de publication

Date de publication:
2020
Historique:
received: 25 11 2019
accepted: 21 07 2020
entrez: 19 10 2020
pubmed: 20 10 2020
medline: 20 10 2020
Statut: epublish

Résumé

Molecular assessments at the single cell level can accelerate biological research by providing detailed assessments of cellular organization and tissue heterogeneity in both disease and health. The human kidney has complex multi-cellular states with varying functionality, much of which can now be completely harnessed with recent technological advances in tissue proteomics at a near single-cell level. We discuss the foundational steps in the first application of this mass spectrometry (MS) based proteomics method for analysis of sub-sections of the normal human kidney, as part of the Kidney Precision Medicine Project (KPMP). Using ~30-40 laser captured micro-dissected kidney cells, we identified more than 2,500 human proteins, with specificity to the proximal tubular (PT;

Identifiants

pubmed: 33072769
doi: 10.3389/fmed.2020.00499
pmc: PMC7533534
doi:

Types de publication

Journal Article

Langues

eng

Pagination

499

Subventions

Organisme : NIDDK NIH HHS
ID : DP3 DK110844
Pays : United States
Organisme : NIDDK NIH HHS
ID : U24 DK114886
Pays : United States
Organisme : NIDDK NIH HHS
ID : U2C DK114886
Pays : United States

Commentaires et corrections

Type : ErratumIn

Informations de copyright

Copyright © 2020 Sigdel, Piehowski, Roy, Liberto, Hansen, Swensen, Zhao, Zhu, Rashmi, Schroeder, Damm, Sur, Luo, Yang, Qian, Sarwal and the Kidney Precision Medicine Project (KPMP) Consortium.

Références

Lancet. 1986 Feb 8;1(8476):307-10
pubmed: 2868172
Science. 2015 Jan 23;347(6220):1260419
pubmed: 25613900
Anal Chem. 2016 May 3;88(9):4864-71
pubmed: 27062885
Proteomics Clin Appl. 2020 Jul;14(4):e1900036
pubmed: 31999393
Pediatr Nephrol. 2020 Feb;35(2):191-197
pubmed: 30607565
Kidney Int. 2001 Jun;59(6):2104-13
pubmed: 11380812
J Proteome Res. 2011 Jul 1;10(7):3040-9
pubmed: 21526778
Nucleic Acids Res. 2019 Jan 8;47(D1):D442-D450
pubmed: 30395289
Nat Protoc. 2016 Dec;11(12):2301-2319
pubmed: 27809316
J Am Soc Nephrol. 2019 Jan;30(1):23-32
pubmed: 30510133
Nephrol Dial Transplant. 2016 Dec;31(12):2003-2011
pubmed: 26487673
Nat Commun. 2018 Feb 28;9(1):882
pubmed: 29491378
J Proteome Res. 2010 Nov 5;9(11):5748-56
pubmed: 20831241
Mol Cell Proteomics. 2015 Jun;14(6):1672-83
pubmed: 25755294
Anal Bioanal Chem. 2019 Jul;411(19):4587-4596
pubmed: 30460388
Nat Methods. 2019 Sep;16(9):809-812
pubmed: 31406385
Anal Chem. 2004 Jan 1;76(1):144-54
pubmed: 14697044
Anal Chem. 2015 Jul 7;87(13):6674-80
pubmed: 26061007
Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):18902-7
pubmed: 19846766
Kidney Int. 2017 Dec;92(6):1334-1342
pubmed: 28893418
J Am Soc Nephrol. 2018 Aug;29(8):2069-2080
pubmed: 29980650
Angew Chem Int Ed Engl. 2013 Dec 16;52(51):13661-4
pubmed: 24173663
Endocrinology. 2016 Mar;157(3):1307-14
pubmed: 26745641
Expert Rev Proteomics. 2010 Feb;7(1):39-53
pubmed: 20121475
Kidney Int. 2018 Jun;93(6):1308-1319
pubmed: 29530281
J Am Soc Nephrol. 2015 Nov;26(11):2669-77
pubmed: 25817355

Auteurs

Tara K Sigdel (TK)

Division of MultiOrgan Transplantation, Department of Surgery, University of California, San Francisco, San Francisco, CA, United States.

Paul D Piehowski (PD)

Pacific Northwest National Laboratory, Biological Sciences Division, Richland, WA, United States.

Sudeshna Roy (S)

Division of MultiOrgan Transplantation, Department of Surgery, University of California, San Francisco, San Francisco, CA, United States.

Juliane Liberto (J)

Division of MultiOrgan Transplantation, Department of Surgery, University of California, San Francisco, San Francisco, CA, United States.

Joshua R Hansen (JR)

Pacific Northwest National Laboratory, Biological Sciences Division, Richland, WA, United States.

Adam C Swensen (AC)

Pacific Northwest National Laboratory, Biological Sciences Division, Richland, WA, United States.

Rui Zhao (R)

Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, United States.

Ying Zhu (Y)

Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, United States.

Priyanka Rashmi (P)

Division of MultiOrgan Transplantation, Department of Surgery, University of California, San Francisco, San Francisco, CA, United States.

Andrew Schroeder (A)

Division of MultiOrgan Transplantation, Department of Surgery, University of California, San Francisco, San Francisco, CA, United States.

Izabella Damm (I)

Division of MultiOrgan Transplantation, Department of Surgery, University of California, San Francisco, San Francisco, CA, United States.

Swastika Sur (S)

Division of MultiOrgan Transplantation, Department of Surgery, University of California, San Francisco, San Francisco, CA, United States.

Jinghui Luo (J)

Department of Pathology, University of Michigan, Ann Arbor, MI, United States.

Yingbao Yang (Y)

Department of Pathology, University of Michigan, Ann Arbor, MI, United States.

Wei-Jun Qian (WJ)

Pacific Northwest National Laboratory, Biological Sciences Division, Richland, WA, United States.

Minnie M Sarwal (MM)

Division of MultiOrgan Transplantation, Department of Surgery, University of California, San Francisco, San Francisco, CA, United States.

Classifications MeSH