Beyond ecosystem modeling: A roadmap to community cyberinfrastructure for ecological data-model integration.

accessibility benchmarking community cyberinfrastructure data data assimilation ecosystem models interoperability reproducibility

Journal

Global change biology
ISSN: 1365-2486
Titre abrégé: Glob Chang Biol
Pays: England
ID NLM: 9888746

Informations de publication

Date de publication:
01 2021
Historique:
received: 24 08 2020
accepted: 16 09 2020
pubmed: 20 10 2020
medline: 22 4 2021
entrez: 19 10 2020
Statut: ppublish

Résumé

In an era of rapid global change, our ability to understand and predict Earth's natural systems is lagging behind our ability to monitor and measure changes in the biosphere. Bottlenecks to informing models with observations have reduced our capacity to fully exploit the growing volume and variety of available data. Here, we take a critical look at the information infrastructure that connects ecosystem modeling and measurement efforts, and propose a roadmap to community cyberinfrastructure development that can reduce the divisions between empirical research and modeling and accelerate the pace of discovery. A new era of data-model integration requires investment in accessible, scalable, and transparent tools that integrate the expertise of the whole community, including both modelers and empiricists. This roadmap focuses on five key opportunities for community tools: the underlying foundations of community cyberinfrastructure; data ingest; calibration of models to data; model-data benchmarking; and data assimilation and ecological forecasting. This community-driven approach is a key to meeting the pressing needs of science and society in the 21st century.

Identifiants

pubmed: 33075199
doi: 10.1111/gcb.15409
pmc: PMC7756391
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

13-26

Subventions

Organisme : Australian Research Council
ID : CE170100023
Organisme : Australian Research Council
ID : DP190101823
Organisme : Academy of Finland
ID : 297350
Organisme : Academy of Finland
ID : 327214
Organisme : National Science Foundation
ID : 1062204
Organisme : National Science Foundation
ID : 1062547
Organisme : National Science Foundation
ID : 1457897
Organisme : National Science Foundation
ID : 1458021
Organisme : National Science Foundation
ID : 1261582
Organisme : NASA
ID : 80NSSC17K0711
Pays : United States
Organisme : Energy Biosciences Institute
Organisme : Amazon AWS
Organisme : Business Finland
ID : 6905/31/2018
Organisme : UK NERC
Organisme : California Institute of Technology
Organisme : Climate and Environmental Sciences Division
Organisme : Department of Energy
ID : DE-SC0012704
Organisme : NSW
Organisme : Oak Ridge National Laboratory
ID : DE-AC05-00OR22725
Organisme : NASA
ID : 80NSSC17K0711
Pays : United States

Informations de copyright

© 2020 The Authors. Global Change Biology published by John Wiley & Sons Ltd.

Références

Ecol Appl. 2020 Apr;30(3):e02064
pubmed: 31872519
Ecosystems. 2017 Mar;20(2):222-228
pubmed: 28855845
Nat Ecol Evol. 2017 May 23;1(6):160
pubmed: 28812630
Proc Natl Acad Sci U S A. 2020 Sep 22;117(38):23490-23498
pubmed: 32900947
Glob Chang Biol. 2020 Jan;26(1):219-241
pubmed: 31469216
Global Biogeochem Cycles. 2019 Oct;33(10):1289-1309
pubmed: 31894175
Glob Chang Biol. 2021 Jan;27(1):13-26
pubmed: 33075199
PLoS Comput Biol. 2016 Oct 20;12(10):e1005097
pubmed: 27764088
Nature. 2019 Feb;566(7743):195-204
pubmed: 30760912
Gigascience. 2016 Jul 11;5(1):30
pubmed: 27401684
Plant Cell Environ. 2013 Sep;36(9):1575-85
pubmed: 23181765
Science. 2018 Feb 2;359(6375):
pubmed: 29420265
New Phytol. 2014 Aug;203(3):883-99
pubmed: 24844873
Elife. 2016 Jul 07;5:
pubmed: 27387362
Glob Chang Biol. 2020 Jan;26(1):287-299
pubmed: 31697014
Ecol Appl. 2019 Jan;29(1):e01822
pubmed: 30362295
Nat Ecol Evol. 2018 Mar;2(3):420-426
pubmed: 29453350
Ecol Appl. 2013 Jan;23(1):273-86
pubmed: 23495651
New Phytol. 2019 Oct;224(2):570-584
pubmed: 31112309
Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):1424-1432
pubmed: 29382745
Front Plant Sci. 2018 May 01;9:517
pubmed: 29765382
Ecology. 2018 Jun;99(6):1507
pubmed: 29603730

Auteurs

Istem Fer (I)

Finnish Meteorological Institute, Helsinki, Finland.

Anthony K Gardella (AK)

Department of Earth and Environment, Boston University, Boston, MA, USA.
School for Environment and Sustainability, University of Michigan, Ann Arbor, MI, USA.

Alexey N Shiklomanov (AN)

Biospheric Sciences Laboratory (618), NASA Goddard Space Flight Center, Greenbelt, MD, USA.

Eleanor E Campbell (EE)

Earth Systems Research Center, University of New Hampshire, Durham, NH, USA.

Elizabeth M Cowdery (EM)

Department of Earth and Environment, Boston University, Boston, MA, USA.

Martin G De Kauwe (MG)

ARC Centre of Excellence for Climate Extremes, Sydney, NSW, Australia.
Climate Change Research Centre, University of New South Wales, Sydney, NSW, Australia.
Evolution & Ecology Research Centre, University of New South Wales, Sydney, NSW, Australia.

Ankur Desai (A)

Department of Atmospheric and Oceanic Sciences, University of Wisconsin-Madison, Madison, WI, USA.

Matthew J Duveneck (MJ)

Harvard Forest, Harvard University, Petersham, MA, USA.

Joshua B Fisher (JB)

Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA.

Katherine D Haynes (KD)

Department of Atmospheric Science, Colorado State University, Fort Collins, CO, USA.

Forrest M Hoffman (FM)

Computational Earth Sciences Group and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, USA.
Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, TN, USA.

Miriam R Johnston (MR)

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.

Rob Kooper (R)

NCSA (National Center for Supercomputing Applications), University of Illinois at Urbana Champaign, Urbana, IL, USA.

David S LeBauer (DS)

College of Agriculture and Life Sciences, University of Arizona, Tucson, AZ, USA.

Joshua Mantooth (J)

The Fulton School at St. Albans, St. Albans, MO, USA.

William J Parton (WJ)

Natural Resource Ecology Laboratory, Colorado State University, Fort Collins, CO, USA.

Benjamin Poulter (B)

Biospheric Sciences Laboratory (618), NASA Goddard Space Flight Center, Greenbelt, MD, USA.

Tristan Quaife (T)

UK National Centre for Earth Observation and Department of Meteorology, University of Reading, Reading, UK.

Ann Raiho (A)

Fish, Wildlife, and Conservation Biology Department, Colorado State University, Fort Collins, CO, USA.

Kevin Schaefer (K)

National Snow and Ice Data Center, Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA.

Shawn P Serbin (SP)

Brookhaven National Laboratory, Environmental and Climate Sciences Department, Upton, NY, USA.

James Simkins (J)

University of Delaware, Newark, DE, USA.

Kevin R Wilcox (KR)

Ecosystem Science and Management, University of Wyoming, Laramie, WY, USA.

Toni Viskari (T)

Finnish Meteorological Institute, Helsinki, Finland.

Michael C Dietze (MC)

Department of Earth and Environment, Boston University, Boston, MA, USA.

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