Introducing the Mangrove Microbiome Initiative: Identifying Microbial Research Priorities and Approaches To Better Understand, Protect, and Rehabilitate Mangrove Ecosystems.

ecosystem rehabilitation ecosystem services mangrove microbiome rhizosphere

Journal

mSystems
ISSN: 2379-5077
Titre abrégé: mSystems
Pays: United States
ID NLM: 101680636

Informations de publication

Date de publication:
20 Oct 2020
Historique:
entrez: 21 10 2020
pubmed: 22 10 2020
medline: 22 10 2020
Statut: epublish

Résumé

Mangrove ecosystems provide important ecological benefits and ecosystem services, including carbon storage and coastline stabilization, but they also suffer great anthropogenic pressures. Microorganisms associated with mangrove sediments and the rhizosphere play key roles in this ecosystem and make essential contributions to its productivity and carbon budget. Understanding this nexus and moving from descriptive studies of microbial taxonomy to hypothesis-driven field and lab studies will facilitate a mechanistic understanding of mangrove ecosystem interaction webs and open opportunities for microorganism-mediated approaches to mangrove protection and rehabilitation. Such an effort calls for a multidisciplinary and collaborative approach, involving chemists, ecologists, evolutionary biologists, microbiologists, oceanographers, plant scientists, conservation biologists, and stakeholders, and it requires standardized methods to support reproducible experiments. Here, we outline the Mangrove Microbiome Initiative, which is focused around three urgent priorities and three approaches for advancing mangrove microbiome research.

Identifiants

pubmed: 33082281
pii: 5/5/e00658-20
doi: 10.1128/mSystems.00658-20
pmc: PMC7577295
pii:
doi:

Types de publication

Journal Article

Langues

eng

Informations de copyright

Copyright © 2020 Allard et al.

Références

Front Microbiol. 2014 Apr 03;5:130
pubmed: 24772107
Microb Ecol. 2013 Jul;66(1):96-104
pubmed: 23649297
Front Microbiol. 2019 Jan 15;9:3337
pubmed: 30697204
Nat Methods. 2019 Jul;16(7):567-571
pubmed: 31227812
Science. 2020 Jun 5;368(6495):1118-1121
pubmed: 32499441
Microbiol Res. 2019 Jun - Aug;223-225:33-43
pubmed: 31178049
PLoS One. 2010 Aug 26;5(8):e12437
pubmed: 20865054
Appl Environ Microbiol. 2007 Oct;73(20):6386-90
pubmed: 17720826
PLoS One. 2014 Feb 24;9(2):e89785
pubmed: 24587033
J Microbiol. 2011 Aug;49(4):535-43
pubmed: 21887634
Nature. 2017 Nov 23;551(7681):457-463
pubmed: 29088705
mBio. 2018 Jul 17;9(4):
pubmed: 30018110
Microb Ecol. 1988 Jan;15(1):59-79
pubmed: 24202863
Curr Biol. 2020 Feb 24;30(4):R153-R154
pubmed: 32097637
Appl Environ Microbiol. 1993 Mar;59(3):881-91
pubmed: 16348896
Braz J Microbiol. 2010 Jan;41(1):235-45
pubmed: 24031486
Nat Biotechnol. 2011 May;29(5):415-20
pubmed: 21552244
Microb Biotechnol. 2017 Nov;10(6):1500-1522
pubmed: 28925555
Oecologia. 2007 Sep;153(3):675-86
pubmed: 17587064
Sci Data. 2016 Mar 15;3:160018
pubmed: 26978244
PLoS One. 2011 Mar 02;6(3):e16943
pubmed: 21399677
Nat Ecol Evol. 2019 Nov;3(11):1509-1520
pubmed: 31636428
Proc Natl Acad Sci U S A. 2002 Nov 26;99(24):15681-6
pubmed: 12438682
Mar Pollut Bull. 2019 Feb;139:181-188
pubmed: 30686417
Mar Pollut Bull. 2018 Aug;133:595-605
pubmed: 30041354
Sci Rep. 2019 Mar 6;9(1):3749
pubmed: 30842580
Environ Sci Technol. 2005 Jun 15;39(12):4640-6
pubmed: 16047804
Sci Adv. 2019 Sep 04;5(9):eaax1814
pubmed: 31517051
Nat Biotechnol. 2019 Nov;37(11):1314-1321
pubmed: 31570900
Nat Rev Microbiol. 2019 Sep;17(9):569-586
pubmed: 31213707
BMC Microbiol. 2012 Aug 30;12:186
pubmed: 22935169
Science. 2011 May 27;332(6033):1097-100
pubmed: 21551032
Nature. 2015 Oct 29;526(7575):631-4
pubmed: 26511562
Mar Environ Res. 2012 Mar;74:9-19
pubmed: 22197479
Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10456-9
pubmed: 18645185
Nat Biomed Eng. 2019 Jul;3(7):520-531
pubmed: 31086325
Nature. 2002 Aug 8;418(6898):630-3
pubmed: 12167859
Mar Pollut Bull. 2016 Aug 30;109(2):700-15
pubmed: 27373945
Trends Microbiol. 2005 Sep;13(9):411-5
pubmed: 16043355
Front Microbiol. 2019 Sep 13;10:2107
pubmed: 31572322
Sci Adv. 2018 Jun 13;4(6):eaao4985
pubmed: 29928690
Sci Rep. 2018 Sep 26;8(1):14397
pubmed: 30258074
Appl Microbiol Biotechnol. 2014 Mar;98(6):2789-803
pubmed: 24113822

Auteurs

Sarah M Allard (SM)

Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA smallard@health.ucsd.edu jsbowman@ucsd.edu.

Matthew T Costa (MT)

Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA.

Ashley N Bulseco (AN)

Marine Science Discipline, Eckerd College, St. Petersburg, Florida, USA.

Véronique Helfer (V)

Department of Ecology, Leibniz Centre for Tropical Marine Research, Bremen, Germany.

Laetitia G E Wilkins (LGE)

Genome and Biomedical Sciences Facility, University of California Davis, Davis, California, USA.

Christiane Hassenrück (C)

Tropical Marine Microbiology, Leibniz Centre for Tropical Marine Research, Bremen, Germany.
Micropaleontology-Paleoceanography, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.

Karsten Zengler (K)

Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA.
Department of Bioengineering, University of California San Diego, La Jolla, California, USA.
Center for Microbiome Innovation, University of California San Diego, La Jolla, California, USA.

Martin Zimmer (M)

Department of Ecology, Leibniz Centre for Tropical Marine Research, Bremen, Germany.
University of Bremen, Faculty 02 Biology/Chemistry, Bremen, Germany.
IUCN SSC-Mangrove Specialist Group.

Natalia Erazo (N)

Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA.

Jorge L Mazza Rodrigues (JL)

Department of Land, Air, and Water Resources, University of California Davis, Davis, California, USA.

Norman Duke (N)

IUCN SSC-Mangrove Specialist Group.
Centre for Tropical Water and Aquatic Ecosystem Research, James Cook University, Townsville, Australia.

Vânia M M Melo (VMM)

Microbial Ecology and Biotechnology Laboratory, Federal University of Ceará, Fortaleza, Ceará, Brazil.

Inka Vanwonterghem (I)

Australian Centre for Ecogenomics, The University of Queensland, Brisbane, Australia.

Howard Junca (H)

RG Microbial Ecology: Metabolism, Genomics & Evolution, Microbiomas Foundation, Chia, Colombia.

Huxley M Makonde (HM)

Department of Pure & Applied Sciences, Technical University of Mombasa, Mombasa, Kenya.

Diego Javier Jiménez (DJ)

Microbiomes and Bioenergy Research Group, Department of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.

Tallita C L Tavares (TCL)

Marine Sciences Institute, Federal University of Ceará, Fortaleza, Ceará, Brazil.

Marco Fusi (M)

Edinburgh Napier University School of Applied Sciences, Edinburgh, United Kingdom.
Red Sea Research Center, BESE, Biological and Environmental Sciences and Engineering Division, KAUST, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Daniele Daffonchio (D)

Red Sea Research Center, BESE, Biological and Environmental Sciences and Engineering Division, KAUST, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Carlos M Duarte (CM)

Red Sea Research Center, BESE, Biological and Environmental Sciences and Engineering Division, KAUST, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Raquel S Peixoto (RS)

Genome and Biomedical Sciences Facility, University of California Davis, Davis, California, USA.
Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil.

Alexandre S Rosado (AS)

Department of Land, Air, and Water Resources, University of California Davis, Davis, California, USA.
Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil.

Jack A Gilbert (JA)

Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA.
Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA.
Center for Microbiome Innovation, University of California San Diego, La Jolla, California, USA.

Jeff Bowman (J)

Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA smallard@health.ucsd.edu jsbowman@ucsd.edu.
Center for Microbiome Innovation, University of California San Diego, La Jolla, California, USA.

Classifications MeSH